Escherichia coli 32-4 |
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Putative Escherichia coli 32-4 RM systems
Ref: Nuesch-Inderbinen,M. et al. unpublished
REBASE ref # 30123
| Sequence length: | GenBank #: | |
| Chromosome: | 4,853,092 bp | CP048310 |
| plasmid p32-4_A: | 170,395 bp | CP048311 |
| plasmid p32-4_B: | 69,245 bp | CP048312 |
REBASE acronym: Eco324
Org_num: 39323
All begin GZS16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3595 | IS5-like element ISKpn26 family transposase | |||
| 3600 | R | Eco5008ORF340P (100% identity) | GAANNNNNNTAYG | Eco324ORF3610P |
| 3605 | S | S.Ecoi162ORF4671P (100% identity) | GAANNNNNNTAYG | S.Eco324ORF3610P |
| 3610 | M | M.Eco5008ORF340P (100% identity) | GAANNNNNNTAYG | M.Eco324ORF3610P |
| 3615 | GTPase family protein | |||
| 8970 | L,D-transpeptidase | |||
| 8975 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.Eco324ORF8975P |
| 8980 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.Eco324ORF8975P |
| 8985 | restriction system-associated AAA family ATPase | |||
| 9550 | IS3 family transposase | |||
| 9555 | R | EcoSB43ORF10515P (100% identity) | Eco324ORF9555P | |
| 9560 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1875 | cell division protein DamX | |||
| 1880 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco324DamP |
| 1885 | ribulose-phosphate 3-epimerase | |||
| 2520 | DUF2556 domain-containing protein | |||
| 2525 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco324ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 9295 | phosphohydrolase | |||
| 9300 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco324DcmP |
| 9305 | V | V.EcosEC7DcmP (100% identity) | V.Eco324DcmP | |
| 9310 | drug/metabolite exporter YedA | |||
| 18195 | LexA family transcriptional regulator | |||
| 18200 | M | M.EcosNDM5ORF17680P (100% identity) | GATC | M.Eco324ORF18200P |
| 18205 | PerC family transcriptional regulator | |||
| plasmid p32-4_A | ||||
| 23780 | 102 aa hypothetical protein | |||
| 23785 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco324ORF23785P | |
| 23790 | 73 aa hypothetical protein | |||
| plasmid p32-4_B | ||||
| 24550 | DUF1380 domain-containing protein | |||
| 24555 | M | M.SenMS114ORFFP (94% identity) | M.Eco324ORF24555P | |
| 24560 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17990 | DUF4113 domain-containing protein | |||
| 17995 | R | EcosEC29GmrSDP (100% identity) | Eco324GmrSDP | |
| 18000 | recombinase family protein | |||