Escherichia coli E138 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli E138 RM systems
Ref: Abe,R. et al. unpublished
REBASE ref # 28584
Complete sequence: 4,812,157 bp
GenBank #: AP022351
REBASE acronym: EcoE138
Org_num: 38064
All begin RIMDOsaka138_, RIMDOsaka138_t
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3010 | repressor TnpA | |||
| 3020 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoE138ORF3040P |
| 3030 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoE138ORF3040P |
| 3040 | M | M.SenceORFJP (100% identity) | CAAYNNNNNCTGG | M.EcoE138ORF3040P |
| 3050 | 73 aa hypothetical protein | |||
| 10800 | 52 aa hypothetical protein | |||
| 10810 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoE138ORF10820P |
| 10820 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoE138ORF10820P |
| 10830 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoE138ORF10820P |
| 10840 | 260 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2310 | IS6 family transposase | |||
| 2320 | R | YpsR1ORFAP (99% identity) | CCWGG | EcoE138ORF2330P |
| ??? | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.EcoE138ORF2330P |
| 2340 | 88 aa hypothetical protein | |||
| 2850 | 73 aa hypothetical protein | |||
| 2860 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoE138ORF2860P |
| 2870 | 308 aa hypothetical protein | |||
| 4010 | 57 aa hypothetical protein | |||
| 4020 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoE138ORF4020P |
| 4030 | LexA family transcriptional regulator | |||
| 4090 | 67 aa hypothetical protein | |||
| 4100 | M | M.EcoSP5ORF17940P (100% identity) | M.EcoE138ORF4100P | |
| 4110 | Lysis protein S homolog from lambdoid prophage | |||
| 7000 | 97 aa hypothetical protein | |||
| 7010 | R | Ecos19ORF20635P (100% identity) | EcoE138ORF7010P | |
| 7020 | 607 aa hypothetical protein | |||
| 7030 | ATPase | |||
| 7040 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoE138ORF7040P |
| 7050 | 166 aa hypothetical protein | |||
| 21050 | 65 aa hypothetical protein | |||
| 21060 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoE138ORF21060P |
| 500 | 25 aa hypothetical protein | |||
| 27150 | inner membrane transporter YedA | |||
| 27160 | V | V.SflC32DcmP (74% identity) | V.EcoE138DcmP | |
| 27170 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoE138DcmP |
| 27180 | phosphohydrolase | |||
| 39870 | DNA-binding protein Fis | |||
| 39880 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoE138ORF39880P |
| 39890 | acrEF/envCD operon transcriptional regulator | |||
| 41010 | ribulose-phosphate 3-epimerase | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoE138DamP |
| 41030 | cell division protein DamX | |||