Escherichia coli STEC409 |
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Putative Escherichia coli STEC409 RM systems
Ref: Yang,X. et al. Int. J. Med. Microbiol. 310 (1), 151377 (2020)
REBASE ref # 29793
| Sequence length: | GenBank #: | |
| Chromosome: | 4,665,377 bp | CP041422 |
| plasmid pSTEC409_1: | 110,902 bp | CP041423 |
| plasmid pSTEC409_2: | 81,110 bp | CP041424 |
REBASE acronym: EcoC409
Org_num: 38091
All begin FNE86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19380 | DUF4942 domain-containing protein | |||
| 19385 | M | M.EcoW26ORF3070P (100% identity) | M.EcoC409ORF19385P | |
| 19390 | S | S.EcoW26ORF3070P (100% identity) | S.EcoC409ORF19385P | |
| 19395 | R | SdyFF10ORF20075P (100% identity) | EcoC409ORF19385P | |
| 19405 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1635 | cell division protein DamX | |||
| 1640 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC409DamP |
| 1645 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 domain-containing protein | |||
| 2275 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoC409ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 12545 | TrmB family transcriptional regulator | |||
| 12550 | M | M.EcoC1746ORF15050P (100% identity) | M.EcoC409ORF12550P | |
| 12570 | Shiga toxin Stx2 subunit A | |||
| 16085 | drug/metabolite exporter YedA | |||
| 16090 | V | V.SflFF64DcmP (100% identity) | V.EcoC409DcmP | |
| 16095 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.EcoC409DcmP |
| 16100 | phosphohydrolase | |||
| 20145 | integrase | |||
| 20150 | R | EcoSTEC1025ORF20625P (100% identity) | GAAC | EcoC409ORF20150P |
| 20155 | ISL3 family transposase | |||
| 20155 | ISL3 family transposase | |||
| 20160 | M | M.EcoSTEC413ORF4250P (100% identity) | M.EcoC409ORF20160P | |
| 20165 | 500 aa hypothetical protein | |||
| 21140 | LexA family transcriptional regulator | |||
| 21145 | M | M.EcoEC0362ORF5955P (93% identity) | M.EcoC409ORF21145P | |
| 21150 | PerC family transcriptional regulator | |||
| plasmid pSTEC409_2 | ||||
| 24025 | 59 aa hypothetical protein | |||
| 24030 | M | M.Sen527ORF25750P (100% identity) | M.EcoC409ORF24030P | |
| 24035 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSTEC409_1 | ||||
| 23225 | 269 aa hypothetical protein | |||
| 23230 | M | M.Sso524ORF460P (100% identity) | M.EcoC409ORF23230P | |
| 23235 | 76 aa hypothetical protein | |||