Lactobacillus paracasei CACC 566 |
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Putative Lactobacillus paracasei CACC 566 RM systems
Ref: Kim,J.-A. et al. unpublished
REBASE ref # 29750
| Sequence length: | GenBank #: | |
| Chromosome: | 3,123,521 bp | CP048003 |
| plasmid p1CACC566: | 64,760 bp | CP048004 |
| plasmid p2CACC566: | 51,921 bp | CP048005 |
REBASE acronym: Lpa566
Org_num: 37949
All begin GWC93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9165 | 188 aa hypothetical protein | |||
| 9170 | R | LpaXI3ORFBP (100% identity) | Lpa566ORF9175P | |
| 9175 | M | M.LpaXI3ORFBP (100% identity) | M.Lpa566ORF9175P | |
| 9180 | S | S1.LpaF11ORF10910P (94% identity) | S1.Lpa566ORF9175P | |
| 9185 | tyrosine-type recombinase/integrase | |||
| 9190 | S | S2.Lpa34716ORF11160P (99% identity) | S2.Lpa566ORF9175P | |
| 9195 | DUF262 domain-containing protein | |||
| plasmid p1CACC566 | ||||
| 15740 | IS5 family transposase | |||
| 15745 | S | S.Lpa34716ORF15385P (100% identity) | S.Lpa566ORF15750P | |
| 15750 | M | M.Lpa34716ORF15385P (100% identity) | M.Lpa566ORF15750P | |
| 15755 | R | Lpa34716ORF15385P (100% identity) | Lpa566ORF15750P | |
| 15760 | pyridoxal-phosphate dependent enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 45 | 69 aa hypothetical protein | |||
| 50 | M | M.LpaF11ORF4785P (100% identity) | M.Lpa566ORF50P | |
| 55 | 143 aa hypothetical protein | |||
| 9860 | AAA family ATPase | |||
| 9865 | M | M.LpaXI3ORFCP (98% identity) | M.Lpa566ORF9865P | |
| 9870 | IS30 family transposase | |||
| 15485 | 69 aa hypothetical protein | |||
| 15490 | M | M.LpaF11ORF4785P (100% identity) | M.Lpa566ORF15490P | |
| 15495 | 143 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p2CACC566 | ||||
| 16205 | IS5 family transposase | |||
| 16210 | R | LrhVSI43ORF12130P (100% identity) | CCAAAA | Lpa566IP |
| 16215 | M | M.LpaF11ORF15205P (100% identity) | CCAAAA | M.Lpa566I |
| 16220 | 29 aa hypothetical protein | |||