Salmonella species S13 |
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Putative Salmonella species S13 RM systems
Ref: Hu,G. and Liu,Y. unpublished
REBASE ref # 29984
| Sequence length: | GenBank #: | |
| Chromosome: | 4,744,425 bp | CP047094 |
| plasmid pS13-1: | 96,320 bp | CP047090 |
| plasmid pS13-2: | 89,179 bp | CP047091 |
REBASE acronym: SspS13
Org_num: 38715
All begin GQN55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2645 | transcription factor | |||
| 2650 | M | M.EcoH84ORFDP (100% identity) | M.SspS13ORF2650P | |
| 2655 | S | S.EcoGYB01I (100% identity) | S.SspS13ORF2650P | |
| 2660 | DUF262 domain-containing protein | |||
| 2665 | DUF262 domain-containing protein | |||
| 2670 | R | EcoH84ORFDP (100% identity) | SspS13ORF2650P | |
| 2675 | DUF45 domain-containing protein | |||
| 3735 | NADPH-dependent aldehyde reductase Ahr | |||
| 3745 | R | Eco41C14ORF20990P (100% identity) | SspS13ORF3745P | |
| 3750 | S | S.Eco41C14ORF20990P (24% identity) | S.SspS13ORF3745P | |
| 3755 | IS1 family transposase | |||
| 3935 | endoribonuclease SymE | |||
| 3940 | S | S.EcosR8ORF2825P (100% identity) | RTCANNNNNNNNGTGG | S.SspS13ORF3945P |
| 3945 | M | M.SflTORF4636P (97% identity) | RTCANNNNNNNNGTGG | M.SspS13ORF3945P |
| 3950 | R | EcosR8ORF2825P (100% identity) | RTCANNNNNNNNGTGG | SspS13ORF3945P |
| 3955 | 139 aa hypothetical protein | |||
| plasmid pS13-1 | ||||
| 160 | 3-phosphatase | |||
| 165 | R | EcoD72ORF22680P (99% identity) | SspS13ORF175P | |
| 170 | S | S.KpnLL83ORF1P (100% identity) | S.SspS13ORF175P | |
| 175 | M | M.KpnLL83ORF1P (100% identity) | M.SspS13ORF175P | |
| 180 | type II toxin-antitoxin system | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1650 | replication endonuclease | |||
| 1655 | M | M.SenXB08ORF22340P (100% identity) | M.SspS13ORF1655P | |
| 1660 | R | R2.SenXB08ORF22340P (100% identity) | SspS13ORF1655P | |
| 1665 | DUF262 domain-containing protein | |||
| 8365 | DUF3850 domain-containing protein | |||
| ??? | M | M.Eco13bORF14655P (99% identity) | M.SspS13ORF8370P | |
| 8375 | replication endonuclease | |||
| 8705 | TraR/DksA family transcriptional regulator | |||
| 8710 | M | M.SflFF60ORF15130P (100% identity) | GATC | M.SspS13ORF8710P |
| 8715 | replication endonuclease | |||
| 14355 | drug/metabolite exporter YedA | |||
| 14360 | V | V.EcoLD391DcmP (100% identity) | V.SspS13DcmP | |
| 14365 | M | M.SflSTLE4DcmP (100% identity) | CCWGG | M.SspS13DcmP |
| 14370 | phosphohydrolase | |||
| 21050 | DNA-binding transcriptional regulator Fis | |||
| 21055 | M | M.SsoSE61ORF11705P (100% identity) | ATGCAT | M.SspS13ORF21055P |
| 21060 | DUF2556 domain-containing protein | |||
| 21675 | ribulose-phosphate 3-epimerase | |||
| 21680 | M | M.UbaC1152DamP (100% identity) | GATC | M.SspS13DamP |
| 21685 | cell division protein DamX | |||
| plasmid pS13-1 | ||||
| 45 | recombination-associated protein RdgC | |||
| 50 | M | M.EcoD72ORF22535P (100% identity) | M.SspS13ORF50P | |
| 65 | tellurite resistance protein | |||
| plasmid pS13-2 | ||||
| 745 | 97 aa hypothetical protein | |||
| 750 | M | M.Xca80ORFEP (100% identity) | M.SspS13ORF750P | |
| 755 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pS13-2 | ||||
| 640 | mobilization protein MobX | |||
| 645 | R | SenMCS14ORF24200P (100% identity) | SspS13ORF650P | |
| 650 | M | M.SenSE74ORF22695P (100% identity) | M.SspS13ORF650P | |
| 655 | 67 aa hypothetical protein | |||