Vibrio parahaemolyticus 20160303005-1 |
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Putative Vibrio parahaemolyticus 20160303005-1 RM systems
Ref: Yang,Q. et al. unpublished
REBASE ref # 30083
| Sequence length: | GenBank #: | |
| chromosome I: | 3,483,160 bp | CP034298 |
| chromosome II: | 1,942,957 bp | CP034299 |
| plasmid pVPSD2016-2: | 193,123 bp | CP034301 |
| plasmid pVPSD2016-4: | 73,460 bp | CP034303 |
| plasmid pVPSD2016-5: | 74,488 bp | CP034304 |
REBASE acronym: Vpa0051
Org_num: 39078
All begin EHC69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 2150 | 331 aa hypothetical protein | |||
| 2155 | S | S.VpaVP17ORF1940P (100% identity) | S.Vpa0051ORF2160P | |
| 2160 | M | M.VpaVP17ORF1940P (100% identity) | M.Vpa0051ORF2160P | |
| 2165 | 132 aa hypothetical protein | |||
| 9720 | 145 aa hypothetical protein | |||
| 9725 | R | VpaVP17ORF9005P (100% identity) | Vpa0051ORF9750P | |
| 9730 | DUF1016 domain-containing protein | |||
| 9735 | 70 aa hypothetical protein | |||
| 9740 | FRG domain-containing protein | |||
| 9745 | S | S1.VpaVP17ORF9005P (100% identity) | S1.Vpa0051ORF9750P | |
| 9750 | M | M.VpaVP17ORF9005P (100% identity) | M.Vpa0051ORF9750P | |
| 9755 | 263 aa hypothetical protein | |||
| chromosome II | ||||
| 23305 | sigma-54-dependent Fis family transcriptional | |||
| 23310 | R | VpaVP17ORF22845P (100% identity) | Vpa0051ORF23315P | |
| 23315 | M | M.VpaVP17ORF22845P (100% identity) | M.Vpa0051ORF23315P | |
| 23320 | S | S1.VpaVP17ORF22845P (83% identity) | S.Vpa0051ORF23315P | |
| 23325 | 511 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 2175 | 94 aa hypothetical protein | |||
| 2180 | M | M.VphVPD14ORF14400P (99% identity) | M.Vpa0051ORF2180P | |
| 2185 | Abi family protein | |||
| 15610 | ribulose-phosphate 3-epimerase | |||
| 15615 | M | M.VphVPD14DamP (100% identity) | GATC | M.Vpa0051DamP |
| 15620 | cell division protein DamX | |||
| plasmid pVPSD2016-2 | ||||
| 27285 | RM | VpaLH80ORF24700P (100% identity) | Vpa0051ORF27285P | |
| 27290 | DNA repair protein | |||
| 27430 | 80 aa hypothetical protein | |||
| 27435 | M | M.VowVC2WORF33925P (100% identity) | M.Vpa0051ORF27435P | |
| 27440 | 91 aa hypothetical protein | |||
| plasmid pVPSD2016-5 | ||||
| 29555 | 366 aa hypothetical protein | |||
| 29560 | M | M.VpaVP17ORF25320P (100% identity) | M.Vpa0051ORF29560P | |
| 29565 | IS5 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pVPSD2016-4 | ||||
| 29190 | mobile mystery protein B | |||
| 29195 | R | VphR14ORF25980P (100% identity) | Vpa0051ORF29200P | |
| 29200 | M | M.VphR14ORF25980P (100% identity) | M.Vpa0051ORF29200P | |
| 29205 | transcription factor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 2220 | AlpA family phage regulatory protein | |||
| 2225 | R | VpaVP17MrrP (100% identity) | Vpa0051MrrP | |
| 2230 | preprotein translocase subunit SecB | |||