Escherichia coli 29957 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 29957 RM systems
Ref: Naithani,A. et al. unpublished
REBASE ref # 29687
| Sequence length: | GenBank #: | |
| Chromosome: | 5,123,217 bp | CP026932 |
| plasmid p29957-1: | 268,665 bp | CP026933 |
| plasmid p29957-2: | 145,001 bp | CP026934 |
REBASE acronym: Eco29957
Org_num: 37687
All begin C5F73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 730 | DNA-binding protein | |||
| 735 | M | M.EcoS19651ORF13565P (100% identity) | M.Eco29957ORF735P | |
| 740 | S | S.EcoS19651ORF13565P (100% identity) | S.Eco29957ORF735P | |
| 745 | R | EcoF247ORF27750P (100% identity) | Eco29957ORF735P | |
| 750 | IS66 family transposase | |||
| 5140 | transposase | |||
| 5150 | R | EcoC0331ORF7685P (100% identity) | TGANNNNNNCTTT | Eco29957ORF5155P |
| 5155 | M | M.EcoDEC2DORF4922P (100% identity) | TGANNNNNNCTTT | M.Eco29957ORF5155P |
| 5160 | S | S.EcoECB1ORF9045P (100% identity) | TGANNNNNNCTTT | S.Eco29957ORF5155P |
| 5165 | SIR2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2400 | cell division protein DamX | |||
| 2405 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco29957DamP |
| 2410 | ribulose-phosphate 3-epimerase | |||
| 28985 | DUF2556 family protein | |||
| 3065 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco29957ORF3065P |
| 3070 | DNA-binding transcriptional regulator Fis | |||
| 8465 | tyrosine-type recombinase/integrase | |||
| 8470 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.Eco29957ORF8470P |
| 8475 | zinc ribbon domain-containing protein | |||
| 10265 | TrmB family transcriptional regulator | |||
| 10270 | M | M.EcosE1ORFAP (100% identity) | M.Eco29957ORF10270P | |
| 29110 | 63 aa hypothetical protein | |||
| 17980 | drug/metabolite exporter YedA | |||
| 17985 | V | V.SsoST152DcmP (100% identity) | V.Eco29957DcmP | |
| 17990 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco29957DcmP |
| 17995 | phosphohydrolase | |||
| plasmid p29957-1 | ||||
| 28910 | 55 aa hypothetical protein | |||
| 26995 | M | M.YpsF1ORFCP (100% identity) | M.Eco29957ORF26995P | |
| 27000 | thermonuclease family protein | |||
| 28925 | 48 aa hypothetical protein | |||
| 27795 | M | M.YpsF1ORFBP (100% identity) | M.Eco29957ORF27795P | |
| 27800 | 202 aa hypothetical protein | |||
| 27925 | DNA-binding protein | |||
| 27930 | M | M.YpsF1ORFDP (100% identity) | M.Eco29957ORF27930P | |
| 27935 | 284 aa hypothetical protein | |||
| plasmid p29957-2 | ||||
| 28140 | IS6 family transposase IS15DI | |||
| 28145 | R | Ubap201ORF4P (100% identity) | CCWGG | Eco29957ORF28150P |
| ??? | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Eco29957ORF28150P |
| 28155 | IS1 family transposase | |||
| 28705 | 73 aa hypothetical protein | |||
| 28710 | M | M.SenS318ORF60P (100% identity) | M.Eco29957ORF28710P | |
| 28715 | 102 aa hypothetical protein | |||