Variovorax species WDL1 |
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Putative Variovorax species WDL1 RM systems
Ref: Werner,J. unpublished
REBASE ref # 27831
| Sequence length: | GenBank #: | |
| chromosome 1: | 6,724,882 bp | LR594689 |
| plasmid 2: | 816,468 bp | LR594690 |
| plasmid 3: | 565,873 bp | LR594691 |
| plasmid 6: | 20,056 bp | LR594694 |
REBASE acronym: VspWDL1
Org_num: 38999
All begin WDL1CHR_, WDL1P1_, WDL1P2_, WDL1P5_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3203 | WLM domain protein | |||
| 3204 | R | VspPBLH6ORF5578P (82% identity) | VspWDL1ORF3207P | |
| 3205 | S | S2.PmoP33ORF20435P (60% identity) | S.VspWDL1ORF3207P | |
| 3206 | Virulence protein | |||
| 3207 | M | M.VspRA8ORF6146P (90% identity) | M.VspWDL1ORF3207P | |
| 3208 | 201 aa hypothetical protein | |||
| 5835 | 273 aa hypothetical protein | |||
| 5836 | S | S.VspRA8ORF2705P (92% identity) | S.VspWDL1ORF5837P | |
| 5837 | M | M.VspRA8ORF2705P (97% identity) | M.VspWDL1ORF5837P | |
| 5838 | succinylglutamate desuccinylase | |||
| plasmid 2 | ||||
| 251 | 69 aa hypothetical protein | |||
| 252 | M | M.VspSRS16ORF248P (99% identity) | M.VspWDL1ORF252P | |
| 253 | S | S.VspSRS16ORF248P (100% identity) | S.VspWDL1ORF252P | |
| 254 | 106 aa hypothetical protein | |||
| 255 | R | VspSRS16ORF248P (99% identity) | VspWDL1ORF252P | |
| 256 | 154 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 75 | DNA topoisomerase 3 | |||
| 76 | M | M.PaePALA20ORF5617P (100% identity) | M.VspWDL1ORF76P | |
| 78 | 185 aa hypothetical protein | |||
| 704 | 75 aa hypothetical protein | |||
| 705 | M | M.VpaVAICORF13830P (86% identity) | M.VspWDL1ORF705P | |
| 706 | 95 aa hypothetical protein | |||
| 725 | 230 aa hypothetical protein | |||
| 726 | M | M.VspPMC12ORF12460P (79% identity) | M.VspWDL1ORF726P | |
| 727 | 82 aa hypothetical protein | |||
| 1165 | 620 aa hypothetical protein | |||
| 1166 | RM | PaeLo326ORF24815P (28% identity) | VspWDL1ORF1166AP | |
| 1167 | RM | Pae19438ORF22755AP (84% identity) | VspWDL1ORF1166BP | |
| 1168 | 1212 aa hypothetical protein | |||
| 4336 | 185 aa hypothetical protein | |||
| 4337 | M | M.PstYH1ORF5240P (96% identity) | M.VspWDL1ORF4337P | |
| 4338 | DNA topoisomerase 3 | |||
| plasmid 2 | ||||
| 876 | 268 aa hypothetical protein | |||
| 877 | M | Gan12ORF8350P (2% identity) | M1.VspWDL1ORF877P | |
| 878 | M | M1.PasD2ORF9345P (54% identity) | M2.VspWDL1ORF877P | |
| 879 | RM | Csp6490ORF2755P (43% identity) | VspWDL1ORF877P | |
| 880 | Tyrosine recombinase XerC | |||
| plasmid 3 | ||||
| 120 | Virulence factors putative positive | |||
| 121 | M | M.VspRA8ORF115P (88% identity) | M.VspWDL1ORF121P | |
| 122 | RelA/SpoT family protein | |||
| plasmid 6 | ||||
| 4 | 63 aa hypothetical protein | |||
| 5 | R | XmaIII (99% identity) | CGGCCG | VspWDL1ORF6P |
| 6 | M | M.XmaIII (100% identity) | CGGCCG | M.VspWDL1ORF6P |
| 7 | transposon Tn552 DNA-invertase bin3 | |||