Variovorax species RA8 |
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Putative Variovorax species RA8 RM systems
Ref: Werner,J. unpublished
REBASE ref # 27831
| Sequence length: | GenBank #: | |
| chromosome 1: | 6,501,578 bp | LR594662 |
| plasmid 3: | 425,299 bp | LR594664 |
| plasmid 4: | 68,393 bp | LR594665 |
REBASE acronym: VspRA8
Org_num: 38997
All begin RA8CHR_, RA8P2_, RA8P3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1675 | ATPase | |||
| 1676 | R | Rsp24678ORF17055P (77% identity) | VspRA8ORF1679P | |
| 1677 | 315 aa hypothetical protein | |||
| 1678 | S | S.Tsp3ORF612P (50% identity) | S.VspRA8ORF1679P | |
| 1679 | M | M.Bba10ORF19420P (90% identity) | M.VspRA8ORF1679P | |
| 1680 | 66 aa hypothetical protein | |||
| 2703 | D-malate degradation protein R | |||
| 2704 | S | S.VspWDL1ORF5837P (92% identity) | S.VspRA8ORF2705P | |
| 2705 | M | M.VspWDL1ORF5837P (97% identity) | M.VspRA8ORF2705P | |
| 2706 | Succinylglutamate desuccinylase / Aspartoacylase | |||
| 6144 | WLM domain protein | |||
| 6145 | R | VspPBSH4ORF6048P (85% identity) | VspRA8ORF6146P | |
| 6146 | M | M.VspWDL1ORF3207P (90% identity) | M.VspRA8ORF6146P | |
| 6147 | S | S.VspPBLH6ORF5578P (82% identity) | S.VspRA8ORF6146P | |
| 6148 | 330 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 110 | Nuclease-related domain protein | |||
| 111 | R | LenB25ORF2450P (56% identity) | VspRA8ORF111P | |
| 112 | LIV-I protein F | |||
| 552 | 527 aa hypothetical protein | |||
| 553 | RM | Psp071ORF2235P (49% identity) | VspRA8ORF553P | |
| 554 | DNA-invertase from lambdoid prophage | |||
| 1673 | 54 aa hypothetical protein | |||
| 1674 | M | M.Axy984ORF24820P (70% identity) | M.VspRA8ORF1674P | |
| 1675 | ATPase | |||
| 5047 | 639 aa hypothetical protein | |||
| 5048 | RM | MspWG5II (55% identity) | VspRA8ORF5048P | |
| 5049 | 247 aa hypothetical protein | |||
| 5482 | 122 aa hypothetical protein | |||
| 5483 | M | M.HgrNS1ORFAP (34% identity) | M.VspRA8ORF5483P | |
| 5484 | methylase | |||
| plasmid 3 | ||||
| 114 | transcriptional regulatory protein | |||
| 115 | M | M.VspWDL1ORF121P (88% identity) | M.VspRA8ORF115P | |
| 116 | Bifunctional (p)ppGpp synthase/hydrolase relA | |||
| plasmid 4 | ||||
| 41 | Plasmid replication initiator protein TrfA | |||
| 42 | R | VspSRS16ORF43P (100% identity) | VspRA8ORF43P | |
| 43 | M | M.VspSRS16ORF43P (100% identity) | M.VspRA8ORF43P | |
| 44 | Transposase, TnpA family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 108 | Thioredoxin reductase | |||
| 109 | R | AthAF04MrrP (55% identity) | VspRA8MrrP | |
| 110 | Nuclease-related domain protein | |||