Acidithiobacillus species 'AMD consortium' |
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Putative Acidithiobacillus species 'AMD consortium' RM systems
Ref: Chen,J. and Mahadevan,R. unpublished
REBASE ref # 28960
Complete sequence: 2,933,811 bp
GenBank #: CP044411
REBASE acronym: AspAMD
Org_num: 35513
All begin F6A13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 995 | GIY-YIG nuclease family protein | |||
| 1000 | R | Afe18981ORF12680P (99% identity) | AspAMDORF1015P | |
| 1005 | S | S2.Afe18981ORF12680P (100% identity) | S2.AspAMDORF1015P | |
| 1010 | S | S1.Afe18981ORF12680P (100% identity) | S1.AspAMDORF1015P | |
| 1015 | M | M.Afe18981ORF12680P (100% identity) | M.AspAMDORF1015P | |
| 1020 | type II toxin-antitoxin system VapC family | |||
| 1730 | YaiI/YqxD family protein | |||
| 1735 | R | type I restriction endonuclease subunit R | AspAMDORF1745P | |
| 1740 | virulence RhuM family protein | |||
| 1745 | M | M.Afe18981ORF11150P (100% identity) | M.AspAMDORF1745P | |
| 1750 | CopG family transcriptional regulator | |||
| 5830 | Fic family protein | |||
| 5835 | R | Afe18981ORF22410P (100% identity) | AYCNNNNNTARC | AspAMDIP |
| 5840 | KilA-N domain-containing protein | |||
| 5845 | M | M.Afe18981ORF22410P (100% identity) | AYCNNNNNTARC | M.AspAMDI |
| 5850 | S | S.Afe18981ORF22410P (99% identity) | AYCNNNNNTARC | S.AspAMDI |
| 5855 | restriction system-associated AAA family ATPase | |||
| 7625 | 218 aa hypothetical protein | |||
| 7630 | M | SAM-dependent DNA methyltransferase | M.AspAMDORF7630P | |
| 7635 | 101 aa hypothetical protein | |||
| 7640 | PIN domain-containing protein | |||
| 7645 | S | S.Afe18981ORF28040P (100% identity) | S.AspAMDORF7630P | |
| 7650 | 218 aa hypothetical protein | |||
| 7720 | toxin-antitoxin system toxin component, | |||
| 7725 | R | Afe18981ORF28240P (95% identity) | AspAMDORF7725P | |
| 7730 | HEPN domain-containing protein | |||
| 14840 | quinoprotein amine dehydrogenase, beta | |||
| 14845 | M | M.Afe18981ORF15740P (100% identity) | YACNNNNNCTGC | M.AspAMDII |
| 14850 | BrnT family toxin | |||
| 14855 | BrnA antitoxin family protein | |||
| 14860 | 71 aa hypothetical protein | |||
| 14865 | 84 aa hypothetical protein | |||
| 14870 | DUF4926 domain-containing protein | |||
| 14875 | S | S.Afe18981ORF15740P (100% identity) | YACNNNNNCTGC | S.AspAMDII |
| 14880 | 238 aa hypothetical protein | |||
| 14885 | R | Afe18981ORF15740P (100% identity) | YACNNNNNCTGC | AspAMDIIP |
| 14890 | carbon-nitrogen hydrolase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6540 | 398 aa hypothetical protein | |||
| 6545 | M | M.AfeBORF139P (100% identity) | M.AspAMDORF6545P | |
| 6550 | single-stranded DNA-binding protein | |||
| 6580 | ATP-binding protein | |||
| 6585 | RM | AfeBYMORF11675P (100% identity) | ACCCAC | AspAMDIV |
| 6590 | SAM-dependent DNA methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3680 | 340 aa hypothetical protein | |||
| 3685 | M | M.DsuPSORF3354P (72% identity) | CAGATG | M.AspAMDIII |
| 3690 | R | Jsv27463ORF1510P (64% identity) | CAGATG | AspAMDIIIP |
| 3695 | 145 aa hypothetical protein | |||