Escherichia coli CVM N55972 |
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Putative Escherichia coli CVM N55972 RM systems
Ref: Tyson,G.H. et al. unpublished
REBASE ref # 29299
| Sequence length: | GenBank #: | |
| Chromosome: | 4,753,715 bp | CP043757 |
| plasmid pN55972-1: | 110,887 bp | CP043759 |
REBASE acronym: Eco55972
Org_num: 36698
All begin F1L16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19620 | restriction endonuclease | |||
| 19625 | R | Ecos15955ORF12100P (99% identity) | Eco55972ORF19630P | |
| 19630 | M | M.Ecos15955ORF12100P (100% identity) | M.Eco55972ORF19630P | |
| 19635 | S | S.Ecos15955ORF12100P (74% identity) | S1.Eco55972ORF19630P | |
| 19640 | IS1 family transposase | |||
| 19645 | S | S.Ecos15955ORF12100P (26% identity) | S2.Eco55972ORF19630P | |
| 19650 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1780 | cell division protein DamX | |||
| 1785 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco55972DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2415 | DUF2556 domain-containing protein | |||
| 2420 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco55972ORF2420P |
| 2425 | DNA-binding transcriptional regulator Fis | |||
| 8890 | phosphohydrolase | |||
| 8895 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco55972DcmP |
| 8900 | V | V.SflFF59DcmP (100% identity) | V.Eco55972DcmP | |
| 8905 | drug/metabolite exporter YedA | |||
| 10855 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco55972ORFAP | |
| 10865 | 59 aa hypothetical protein | |||
| 17480 | 198 aa hypothetical protein | |||
| 17485 | R | Sso8033ORF3755P (100% identity) | Eco55972ORF17490P | |
| 17490 | M | M.Sso8033ORF3755P (100% identity) | M.Eco55972ORF17490P | |
| 17495 | 257 aa hypothetical protein | |||
| 17780 | DUF1317 family protein | |||
| 17785 | M | M.Sbo812ORFAP (100% identity) | M.Eco55972ORF17785P | |
| 17790 | 99 aa hypothetical protein | |||
| 21260 | phage holin, lambda family | |||
| 21265 | M | M.SenS50ORF21465P (100% identity) | M.Eco55972ORF21265P | |
| 21270 | 67 aa hypothetical protein | |||
| 21295 | LexA family transcriptional regulator | |||
| 21300 | M | M.SflN101ORF11410P (99% identity) | GATC | M.Eco55972ORF21300P |
| 21305 | PerC family transcriptional regulator | |||
| plasmid pN55972-1 | ||||
| 23675 | 73 aa hypothetical protein | |||
| 23680 | M | M.Sen1045ORF24220P (99% identity) | M.Eco55972ORF23680P | |
| 23685 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19615 | GTPase | |||
| 19620 | R | Eco2179MrrP (99% identity) | Eco55972MrrP | |
| 19625 | type I restriction-modification system | |||