Rhodococcus qingshengii RL1 |
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Putative Rhodococcus qingshengii RL1 RM systems
Ref: Kuhl,T. and Paul Chowdhury,S. unpublished
REBASE ref # 28978
| Sequence length: | GenBank #: | |
| Chromosome: | 6,253,838 bp | CP042917 |
| plasmid unnamed1: | 144,038 bp | CP042916 |
| plasmid unnamed2: | 448,745 bp | CP042915 |
REBASE acronym: RqiRL1
Org_num: 35552
All begin D6M20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid unnamed1 | ||||
| 2730 | 74 aa hypothetical protein | |||
| 2735 | M | M.RspM835ORF20P (92% identity) | GGANNNNNNNNTCGC | M.RqiRL1I |
| 2740 | S | S.RruP25ORFHP (56% identity) | GGANNNNNNNNTCGC | S.RqiRL1I |
| 2745 | R | RspBH4ORF31695P (93% identity) | GGANNNNNNNNTCGC | RqiRL1IP |
| 2750 | Tn3 family transposase | |||
| plasmid unnamed2 | ||||
| 1230 | cutinase family protein | |||
| 1235 | S | S.RopOD7ORF43430P (74% identity) | S.RqiRL1ORF1235P | |
| 1240 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5845 | M | M.RqiA29k1DndAP (100% identity) | M.RqiRL1DndAP | |
| 5850 | DNA sulfur modification protein DndB | |||
| 5845 | cysteine desulfurase DndA | |||
| 5850 | M | M.RqiA29k1DndBP (95% identity) | M.RqiRL1DndBP | |
| 5855 | DNA phosphorothioation system sulfurtransferase | |||
| 5850 | DNA sulfur modification protein DndB | |||
| 5855 | M | M.RqiA29k1DndCP (100% identity) | M.RqiRL1DndCP | |
| 5860 | DNA sulfur modification protein DndD | |||
| 5855 | DNA phosphorothioation system sulfurtransferase | |||
| 5860 | M | M.RqiA29k1DndDP (100% identity) | M.RqiRL1DndDP | |
| 5865 | DNA sulfur modification protein DndE | |||
| 5860 | DNA sulfur modification protein DndD | |||
| 5865 | M | M.RqiA29k1DndEP (98% identity) | M.RqiRL1DndEP | |
| 5870 | DNA phosphorothioation-associated putative | |||
| 6295 | multidrug effflux MFS transporter | |||
| 6305 | M | M.RqiA29k1ORF250P (100% identity) | M.RqiRL1ORF6305P | |
| 6310 | TetR/AcrR family transcriptional regulator | |||
| 23230 | glycolipid-binding domain-containing | |||
| 23235 | M | M.RspBH4ORF1670P (100% identity) | CTCGAG | M.RqiRL1II |
| 23240 | 286 aa hypothetical protein | |||
| 23245 | V | V.RspP2ORF14690P (100% identity) | CTCGAG | V.RqiRL1IIP |
| 23250 | DUF998 domain-containing protein | |||
| plasmid unnamed2 | ||||
| 1745 | 66 aa hypothetical protein | |||
| 1750 | R | Msp89BORF22005P (44% identity) | RqiRL1ORF1755P | |
| 1755 | M | M.JinTT2ORF14745P (55% identity) | M.RqiRL1ORF1755P | |
| 1760 | ATP-binding protein | |||