Treponema phagedenis S8.5 |
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Putative Treponema phagedenis S8.5 RM systems
Ref: Kuhnert,P. unpublished
REBASE ref # 30072
Complete sequence: 3,244,101 bp
GenBank #: CP042814
REBASE acronym: TphS85
Org_num: 38985
All begin FUT80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2755 | 142 aa hypothetical protein | |||
| 2760 | M | M.TphV1ORF40163P (100% identity) | M.TphS85ORF2760P | |
| 2765 | uracil permease | |||
| 13525 | 114 aa hypothetical protein | |||
| 13530 | M | M.TphT320AORF8850P (100% identity) | M.TphS85ORF13530P | |
| 13535 | virulence RhuM family protein | |||
| 13540 | cell filamentation protein Fic | |||
| 13545 | S | S.TphV1ORF30177P (65% identity) | S1.TphS85ORF13530P | |
| 13550 | S | S2.TphB365ORF15335P (98% identity) | S2.TphS85ORF13530P | |
| 13555 | R | TphB365ORF15335P (100% identity) | TphS85ORF13530P | |
| 13560 | MFS transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 110 | ImmA/IrrE family metallo-endopeptidase | |||
| 115 | RM | TphS23ORF7595P (99% identity) | TphS85ORF115P | |
| 120 | S | S.TphV1ORF20197P (77% identity) | S.TphS85ORF115P | |
| 125 | 121 aa hypothetical protein | |||
| 375 | single-stranded DNA-binding protein | |||
| 380 | M | M.TphB431ORF5095P (81% identity) | M.TphS85ORF380P | |
| 385 | 73 aa hypothetical protein | |||
| 390 | 98 aa hypothetical protein | |||
| 395 | M | M.TphB431ORF5080P (99% identity) | M.TphS85ORF395P | |
| 400 | 79 aa hypothetical protein | |||
| 405 | ATP-binding protein | |||
| 410 | M | M.TphB431ORF70P (99% identity) | M.TphS85ORF410P | |
| 415 | AAA family ATPase | |||
| 1510 | 172 aa hypothetical protein | |||
| 1515 | M | M.TphV1ORF260015P (100% identity) | M.TphS85ORF1515P | |
| 1520 | 535 aa hypothetical protein | |||
| 3005 | TdeIII family type II restriction endonuclease | |||
| 3010 | M | M.TphV1ORF40108P (100% identity) | M.TphS85ORF3010P | |
| 3015 | ABC transporter ATP-binding protein | |||
| 3610 | 329 aa hypothetical protein | |||
| 3615 | M | M.TphT320AORF14130P (100% identity) | M.TphS85ORF3615P | |
| 3620 | sensor histidine kinase | |||
| 3625 | 421 aa hypothetical protein | |||
| 3630 | V | V.TphB314ORF6710P (100% identity) | V.TphS85ORF3615P | |
| 3635 | DNA-binding protein | |||
| 3940 | DUF3847 domain-containing protein | |||
| 3945 | S | S2.TphB314ORF7050P (100% identity) | S2.TphS85ORF3955P | |
| 3950 | S | S1.TphB314ORF7050P (91% identity) | S1.TphS85ORF3955P | |
| 3955 | RM | TphB314ORF7050P (100% identity) | TphS85ORF3955P | |
| 3960 | C | C.TphB314ORF7050P (98% identity) | C.TphS85ORF3955P | |
| 3965 | 52 aa hypothetical protein | |||
| 3975 | DUF3847 domain-containing protein | |||
| 3980 | R | TphB314ORF7080P (100% identity) | GATC | TphS85ORF3985P |
| 3985 | M | M.TphS23ORF8205P (100% identity) | GATC | M.TphS85ORF3985P |
| 3990 | C | C.TphV1ORF20037P (100% identity) | C.TphS85ORF3985P | |
| 3995 | replication initiator protein A | |||
| 5500 | DUF4406 domain-containing protein | |||
| 5505 | M | M.TphS23ORF7400P (99% identity) | M.TphS85ORF5505P | |
| 5510 | oxidoreductase | |||
| 5520 | 167 aa hypothetical protein | |||
| 5525 | M | M.TphS23ORF10380P (88% identity) | M.TphS85ORF5525P | |
| 5530 | AAA family ATPase | |||
| 7380 | ImmA/IrrE family metallo-endopeptidase | |||
| 7385 | RM | TphB431ORF5370P (99% identity) | TphS85ORF7385P | |
| 7390 | S | S1.TphB431ORF5370P (99% identity) | S.TphS85ORF7385P | |
| 7395 | 121 aa hypothetical protein | |||
| 7635 | single-stranded DNA-binding protein | |||
| 7640 | M | M.TphB431ORF5095P (96% identity) | M.TphS85ORF7640P | |
| 7645 | 73 aa hypothetical protein | |||
| 7650 | 98 aa hypothetical protein | |||
| 7655 | M | M.TphT320AORF785P (99% identity) | M.TphS85ORF7655P | |
| 7660 | 79 aa hypothetical protein | |||
| 8120 | pyruvate kinase | |||
| 8125 | M | M.TphS23ORF415P (100% identity) | M.TphS85ORF13365P | |
| 8130 | 61 aa hypothetical protein | |||
| 8330 | 184 aa hypothetical protein | |||
| 8335 | M | M.TphB314ORF850P (100% identity) | M.TphS85ORF8335P | |
| 8340 | 80 aa hypothetical protein | |||
| 8760 | restriction endonuclease | |||
| 8765 | M | M.TphV1ORF30070P (95% identity) | M.TphS85ORF8765P | |
| 8770 | TrkH family potassium uptake protein | |||
| 11080 | excinuclease ABC subunit B | |||
| 11085 | M | M.TphS23ORF2230P (99% identity) | M.TphS85ORF11085P | |
| 11090 | 184 aa hypothetical protein | |||
| 11400 | 229 aa hypothetical protein | |||
| 11405 | M | M.TphS23ORF15025P (100% identity) | M.TphS85ORF11405P | |
| 11410 | R | TphV1ORF290010P (100% identity) | TphS85ORF11405P | |
| 11415 | 89 aa hypothetical protein | |||
| 13985 | TIGR02678 family protein | |||
| 13990 | R | TphT320AORF9745P (100% identity) | TphS85ORF13995P | |
| 13995 | M | M1.TphKS1ORF2805P (100% identity) | M1.TphS85ORF13995P | |
| 14000 | M | M2.TphV1ORF510001P (100% identity) | M2.TphS85ORF13995P | |
| 14005 | sucrose-6-phosphate hydrolase | |||
| 14035 | methyl-accepting chemotaxis protein | |||
| 14040 | M | M.TphS85ORF14070P (100% identity) | M.TphS85ORF14040P | |
| 14045 | 288 aa hypothetical protein | |||
| 14065 | 333 aa hypothetical protein | |||
| 14070 | M | M.TphS85ORF14040P (100% identity) | M.TphS85ORF14070P | |
| 14075 | 288 aa hypothetical protein | |||
| 14110 | 192 aa hypothetical protein | |||
| 14115 | M | M.TphB314ORF3020P (100% identity) | M.TphS85ORF14115P | |
| 14120 | 36 aa hypothetical protein | |||
| 14135 | formylglycine-generating enzyme family protein | |||
| 14140 | R | TphB314ORF3045P (100% identity) | TphS85ORF14140P | |
| 14145 | restriction endonuclease subunit M | |||
| 14140 | DUF262 domain-containing protein | |||
| 14145 | M | M.TphB365ORF14570P (100% identity) | M.TphS85ORF14145P | |
| 14150 | 118 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3430 | alpha/beta fold hydrolase | |||
| 3435 | R | TphS23ORF8415P (100% identity) | TphS85ORF3440P | |
| 3440 | M | M.TphS23ORF8415P (100% identity) | M.TphS85ORF3440P | |
| 3445 | DUF4868 domain-containing protein | |||
| 3585 | helix-turn-helix transcriptional regulator | |||
| 3590 | M | M.TphV1ORF90053P (100% identity) | M.TphS85ORF3590P | |
| 3595 | 93 aa hypothetical protein | |||
| 10840 | IclR family transcriptional regulator | |||
| 10845 | R | TphB365ORF1620P (99% identity) | TphS85ORF10850P | |
| 10850 | M | M.TphRORF2105P (96% identity) | M.TphS85ORF10850P | |
| 10855 | 135 aa hypothetical protein | |||