Treponema phagedenis S2.3 |
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Putative Treponema phagedenis S2.3 RM systems
Ref: Kuhnert,P. unpublished
REBASE ref # 30072
Complete sequence: 3,446,583 bp
GenBank #: CP042815
REBASE acronym: TphS23
Org_num: 38984
All begin FUT83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6720 | 142 aa hypothetical protein | |||
| 6725 | M | M.TphV1ORF40163P (100% identity) | M.TphS23ORF6725P | |
| 6730 | uracil permease | |||
| 13930 | MFS transporter | |||
| 13935 | R | TphS111ORF13875P (100% identity) | TphS23ORF13960P | |
| 13940 | S | S2.TphS111ORF13875P (100% identity) | S2.TphS23ORF13960P | |
| 13945 | S | S1.TphS111ORF13875P (99% identity) | S1.TphS23ORF13960P | |
| 13950 | cell filamentation protein Fic | |||
| 13955 | virulence RhuM family protein | |||
| 13960 | M | M.TphT320AORF8850P (100% identity) | M.TphS23ORF13960P | |
| 13965 | 114 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 410 | HAMP domain-containing protein | |||
| 415 | M | M.TphS85ORF13365P (100% identity) | M.TphS23ORF415P | |
| 420 | 94 aa hypothetical protein | |||
| 625 | 184 aa hypothetical protein | |||
| 630 | M | M.TphV1ORF30139P (100% identity) | M.TphS23ORF630P | |
| 635 | phosphohydrolase | |||
| 2000 | DUF436 domain-containing protein | |||
| 2005 | M | M.TphS111ORF1990P (100% identity) | M.TphS23ORF2005P | |
| 2010 | 63 aa hypothetical protein | |||
| 2150 | 184 aa hypothetical protein | |||
| 2155 | M | M.TphS23ORF9240P (100% identity) | M.TphS23ORF2155P | |
| 2160 | haloacid dehalogenase-like hydrolase | |||
| 2225 | ABC transporter ATP-binding protein | |||
| 2230 | M | M.TphS111ORF2220P (100% identity) | M.TphS23ORF2230P | |
| 2235 | 184 aa hypothetical protein | |||
| 2415 | 61 aa hypothetical protein | |||
| 2420 | M | M.TphS111ORF13530P (100% identity) | M.TphS23ORF13395P | |
| 2425 | 284 aa hypothetical protein | |||
| 2490 | DUF4406 domain-containing protein | |||
| 2495 | M | M.TphS111ORF2485P (97% identity) | M.TphS23ORF2495P | |
| 2500 | oxidoreductase | |||
| 2510 | 167 aa hypothetical protein | |||
| 2515 | M | M.TphS111ORF2505P (100% identity) | M.TphS23ORF2515P | |
| 2520 | 61 aa hypothetical protein | |||
| 2720 | 184 aa hypothetical protein | |||
| 2725 | M | M.TphS111ORF2710P (100% identity) | M.TphS23ORF2725P | |
| 2730 | site-specific integrase | |||
| 3225 | 184 aa hypothetical protein | |||
| 3230 | M | M.TphS111ORF3220P (100% identity) | M.TphS23ORF3230P | |
| 3235 | DUF4325 domain-containing protein | |||
| 3865 | 94 aa hypothetical protein | |||
| 3870 | M | M.TphB365ORF5245P (100% identity) | M.TphS23ORF3870P | |
| 3875 | VOC family protein | |||
| 4005 | IS256 family transposase | |||
| 4010 | M | M1.TphT320AORF8425P (100% identity) | M.TphS23ORF4010P | |
| 4015 | MBL fold metallo-hydrolase | |||
| 4085 | TrkH family potassium uptake protein | |||
| 4090 | M | M.TphS111ORF4075P (100% identity) | M.TphS23ORF4090P | |
| 4095 | restriction endonuclease | |||
| 6180 | TdeIII family type II restriction endonuclease | |||
| 6185 | M | M.TphV1ORF40108P (100% identity) | M.TphS23ORF6185P | |
| 6190 | ABC transporter ATP-binding protein | |||
| 7395 | oxidoreductase | |||
| 7400 | M | M.TphS111ORF7310P (100% identity) | M.TphS23ORF7400P | |
| 7405 | DUF4406 domain-containing protein | |||
| 7580 | 155 aa hypothetical protein | |||
| 7585 | S | S2.TphS111ORF7505P (100% identity) | S2.TphS23ORF7595P | |
| 7590 | S | S1.TphS111ORF7505P (100% identity) | S1.TphS23ORF7595P | |
| 7595 | RM | TphS111ORF7505P (100% identity) | TphS23ORF7595P | |
| 7600 | ImmA/IrrE family metallo-endopeptidase | |||
| 8200 | VWA domain-containing protein | |||
| 8205 | M | M.TphS85ORF3985P (100% identity) | GATC | M.TphS23ORF8205P |
| 8210 | R | TphS111ORF8120P (100% identity) | GATC | TphS23ORF8205P |
| 8215 | DUF3847 domain-containing protein | |||
| 9235 | dicarboxylate/amino acid:cation symporter | |||
| 9240 | M | M.TphS23ORF2155P (100% identity) | M.TphS23ORF9240P | |
| 9245 | 184 aa hypothetical protein | |||
| 9435 | 94 aa hypothetical protein | |||
| 9440 | M | M.TphS111ORF9350P (100% identity) | M.TphS23ORF13790P | |
| 9445 | DNA helicase RecQ | |||
| 10145 | ImmA/IrrE family metallo-endopeptidase | |||
| 10150 | RM | TphB365ORF4670P (99% identity) | TphS23ORF10150P | |
| 10155 | S | S1.TphB431ORF8445P (99% identity) | S1.TphS23ORF10150P | |
| 10160 | S | S2.TphS111ORF10065P (100% identity) | S2.TphS23ORF10150P | |
| 10165 | 121 aa hypothetical protein | |||
| 10375 | 167 aa hypothetical protein | |||
| 10380 | M | M.TphS111ORF10300P (99% identity) | M.TphS23ORF10380P | |
| 10385 | AAA family ATPase | |||
| 11215 | 555 aa hypothetical protein | |||
| 11220 | M | M.TphV1ORF260015P (100% identity) | M.TphS23ORF11220P | |
| 11225 | 172 aa hypothetical protein | |||
| 12745 | 288 aa hypothetical protein | |||
| 12750 | M | M.TphS85ORF14070P (100% identity) | M.TphS23ORF12750P | |
| 12755 | 193 aa hypothetical protein | |||
| 12830 | 288 aa hypothetical protein | |||
| 12835 | M | M.TphS111ORF12970P (100% identity) | M.TphS23ORF12835P | |
| 12840 | 153 aa hypothetical protein | |||
| 12875 | 288 aa hypothetical protein | |||
| 12880 | M | M.TphS85ORF14070P (100% identity) | M.TphS23ORF12880P | |
| 12885 | 192 aa hypothetical protein | |||
| 12950 | DUF2971 domain-containing protein | |||
| 12955 | M | M.TphS111ORF13090P (100% identity) | M.TphS23ORF12955P | |
| 12960 | R | TphS111ORF13090P (100% identity) | TphS23ORF12955P | |
| 12965 | DUF1643 domain-containing protein | |||
| 13040 | sucrose-6-phosphate hydrolase | |||
| 13045 | M | M2.TphV1ORF510001P (100% identity) | M1.TphS23ORF13045P | |
| 13050 | M | M2.TphS111ORF13180P (100% identity) | M2.TphS23ORF13045P | |
| 13055 | R | TphT320AORF9745P (100% identity) | TphS23ORF13045P | |
| 13060 | TIGR02678 family protein | |||
| 13185 | methyl-accepting chemotaxis protein | |||
| 13190 | M | M.TphS23ORF9240P (100% identity) | M.TphS23ORF13190P | |
| 13195 | 184 aa hypothetical protein | |||
| 13570 | carbon starvation protein A | |||
| 13575 | M | M.TphV1ORF30139P (100% identity) | M.TphS23ORF3650P | |
| 13580 | 184 aa hypothetical protein | |||
| 15015 | 89 aa hypothetical protein | |||
| 15020 | R | TphS111ORF14940P (100% identity) | TphS23ORF15025P | |
| 15025 | M | M.TphS85ORF11405P (100% identity) | M.TphS23ORF15025P | |
| 15030 | 229 aa hypothetical protein | |||
| 15220 | transposase | |||
| 15225 | M | M.TphS111ORF15140P (100% identity) | M.TphS23ORF15225P | |
| 15230 | 117 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2840 | 75 aa hypothetical protein | |||
| 2845 | M | M.TphV1ORF140026P (96% identity) | M.TphS23ORF2845P | |
| 2850 | R | TphS111ORF2835P (100% identity) | TphS23ORF2845P | |
| 2855 | IclR family transcriptional regulator | |||
| 8410 | DUF4868 domain-containing protein | |||
| 8415 | M | M.TphS85ORF3440P (100% identity) | M.TphS23ORF8415P | |
| 8420 | R | TphS85ORF3440P (100% identity) | TphS23ORF8415P | |
| 8425 | alpha/beta fold hydrolase | |||
| 10770 | IS256 family transposase | |||
| 10775 | R | TphS111ORF10695P (100% identity) | TphS23ORF10780P | |
| 10780 | M | M.TphS111ORF10695P (100% identity) | M.TphS23ORF10780P | |
| 10785 | helix-turn-helix transcriptional regulator | |||