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Putative Treponema phagedenis B31.4 RM systems
Ref: Kuhnert,P. unpublished
REBASE ref # 30072
Complete sequence: 3,186,808 bp
GenBank #: CP042816
REBASE acronym: TphB314
Org_num: 38980
All begin FUT84_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2410 | 114 aa hypothetical protein | |||
2415 | M | M.TphB431ORF2455P (43% identity) | M.TphB314ORF2415AP | |
2420 | IS5 family transposase | |||
2425 | M | M.TphT320AORF8850P (56% identity) | M.TphB314ORF2415BP | |
2430 | virulence RhuM family protein | |||
2435 | cell filamentation protein Fic | |||
2440 | S | S1.TphKS1ORF2355P (99% identity) | S1.TphB314ORF2415P | |
2445 | S | S.TphV1ORF30177P (38% identity) | S2.TphB314ORF2415P | |
2450 | R | TphS85ORF13530P (100% identity) | TphB314ORF2415P | |
2455 | MFS transporter | |||
5840 | 142 aa hypothetical protein | |||
5845 | M | M.TphV1ORF40163P (100% identity) | M.TphB314ORF5845P | |
5850 | uracil permease | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
505 | 89 aa hypothetical protein | |||
510 | R | TphS23ORF15025P (100% identity) | TphB314ORF515P | |
515 | M | M.TphS85ORF11405P (100% identity) | M.TphB314ORF515P | |
520 | 229 aa hypothetical protein | |||
845 | 184 aa hypothetical protein | |||
850 | M | M.TphS85ORF8335P (100% identity) | M.TphB314ORF850P | |
855 | formylmethanofuran dehydrogenase | |||
1090 | 79 aa hypothetical protein | |||
1095 | M | M.TphT320AORF785P (100% identity) | M.TphB314ORF1095P | |
1100 | 98 aa hypothetical protein | |||
1105 | 73 aa hypothetical protein | |||
1110 | M | M.TphV1ORF10172P (95% identity) | M.TphB314ORF1110P | |
1115 | single-stranded DNA-binding protein | |||
1150 | oxidoreductase | |||
1155 | M | M.TphS111ORF2485P (97% identity) | M.TphB314ORF1155P | |
1160 | DUF4406 domain-containing protein | |||
1385 | 121 aa hypothetical protein | |||
1390 | S | S2.TphS23ORF7595P (100% identity) | S2.TphB314ORF1400P | |
1395 | S | S.TphV1ORF20197P (66% identity) | S1.TphB314ORF1400P | |
1400 | RM | TphS23ORF7595P (100% identity) | TphB314ORF1400P | |
1405 | ImmA/IrrE family metallo-endopeptidase | |||
2880 | TIGR02678 family protein | |||
2885 | R | TphT320AORF9745P (100% identity) | TphB314ORF2890P | |
2890 | M | M1.TphS85ORF13995P (100% identity) | M1.TphB314ORF2890P | |
2895 | M | M2.TphV1ORF510001P (100% identity) | M2.TphB314ORF2890P | |
2900 | sucrose-6-phosphate hydrolase | |||
2930 | methyl-accepting chemotaxis protein | |||
2935 | M | M.TphS85ORF14070P (100% identity) | M1.TphB314ORF2935P | |
2940 | 288 aa hypothetical protein | |||
2945 | 291 aa hypothetical protein | |||
2950 | 146 aa hypothetical protein | |||
2955 | ATP-dependent DNA helicase RecQ | |||
2960 | 333 aa hypothetical protein | |||
??? | M | M.TphS85ORF14070P (85% identity) | M2.TphB314ORF2935P | |
2970 | 288 aa hypothetical protein | |||
2960 | 333 aa hypothetical protein | |||
2965 | M | M.TphS85ORF14070P (100% identity) | M.TphB314ORF2965P | |
2970 | 288 aa hypothetical protein | |||
3015 | 192 aa hypothetical protein | |||
3020 | M | M.TphS85ORF14115P (100% identity) | M.TphB314ORF3020P | |
3025 | 36 aa hypothetical protein | |||
3040 | formylglycine-generating enzyme family protein | |||
3045 | R | TphS85ORF14140P (100% identity) | TphB314ORF3045P | |
3050 | restriction endonuclease subunit M | |||
3045 | DUF262 domain-containing protein | |||
3050 | M | M.TphS85ORF14145P (83% identity) | M.TphB314ORF3050P | |
3055 | 118 aa hypothetical protein | |||
4605 | 172 aa hypothetical protein | |||
4610 | M | M.TphV1ORF260015P (100% identity) | M.TphB314ORF4610P | |
4615 | 555 aa hypothetical protein | |||
6090 | TdeIII family type II restriction endonuclease | |||
6095 | M | M.TphV1ORF40108P (100% identity) | M.TphB314ORF6095P | |
6100 | ABC transporter ATP-binding protein | |||
6705 | 329 aa hypothetical protein | |||
6710 | M | M.TphT320AORF14130P (100% identity) | M.TphB314ORF6710P | |
6715 | sensor histidine kinase | |||
6720 | 421 aa hypothetical protein | |||
6725 | V | V.TphS85ORF3615P (100% identity) | V.TphB314ORF6710P | |
6730 | DNA-binding protein | |||
7035 | DUF3847 domain-containing protein | |||
7040 | S | S2.TphS85ORF3955P (100% identity) | S2.TphB314ORF7050P | |
7045 | S | S1.TphS85ORF3955P (91% identity) | S1.TphB314ORF7050P | |
7050 | RM | TphS85ORF3955P (100% identity) | TphB314ORF7050P | |
7055 | C | C.TphS85ORF3955P (98% identity) | C.TphB314ORF7050P | |
7060 | 52 aa hypothetical protein | |||
7070 | DUF3847 domain-containing protein | |||
7075 | R | TphS85ORF3985P (100% identity) | GATC | TphB314ORF7080P |
7080 | M | M.TphS85ORF3985P (100% identity) | GATC | M.TphB314ORF7080P |
7085 | C | C.TphV1ORF20037P (100% identity) | C.TphB314ORF7080P | |
7090 | replication initiator protein A | |||
8605 | 167 aa hypothetical protein | |||
8610 | M | M.TphKS1AORF95P (99% identity) | M.TphB314ORF8610P | |
8615 | AAA family ATPase | |||
11265 | restriction endonuclease | |||
11270 | M | M.TphS23ORF4090P (100% identity) | M.TphB314ORF11270P | |
11275 | TrkH family potassium uptake protein | |||
13565 | excinuclease ABC subunit B | |||
13570 | M | M.TphKS1AORF15620P (98% identity) | M.TphB314ORF13570P | |
13575 | 184 aa hypothetical protein | |||
13785 | 94 aa hypothetical protein | |||
13790 | M | M.TphS85ORF13365P (100% identity) | M.TphB314ORF13790P | |
13795 | formylmethanofuran dehydrogenase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6515 | alpha/beta fold hydrolase | |||
6520 | R | TphS85ORF3440P (100% identity) | TphB314ORF6525P | |
6525 | M | M.TphS85ORF3440P (100% identity) | M.TphB314ORF6525P | |
6530 | DUF4868 domain-containing protein | |||
6680 | helix-turn-helix transcriptional regulator | |||
6685 | M | M.TphV1ORF90053P (100% identity) | M.TphB314ORF6685P | |
6690 | 93 aa hypothetical protein | |||
13340 | IclR family transcriptional regulator | |||
13345 | R | TphV1ORF140026P (99% identity) | TphB314ORF13350P | |
13350 | M | M.TphV1ORF140026P (96% identity) | M.TphB314ORF13350P | |
13355 | 75 aa hypothetical protein |