Treponema phagedenis B43.1 |
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Putative Treponema phagedenis B43.1 RM systems
Ref: Kuhnert,P. unpublished
REBASE ref # 30072
Complete sequence: 3,372,116 bp
GenBank #: CP042818
REBASE acronym: TphB431
Org_num: 38982
All begin FUT79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2450 | 114 aa hypothetical protein | |||
| 2455 | M | M.TphT320AORF8850P (100% identity) | M.TphB431ORF2455P | |
| 2460 | virulence RhuM family protein | |||
| 2465 | cell filamentation protein Fic | |||
| 2470 | S | S1.TphKS1ORF2355P (100% identity) | S1.TphB431ORF2455P | |
| 2475 | S | S2.TphKS1ORF2355P (100% identity) | S2.TphB431ORF2455P | |
| 2480 | IS5 family transposase | |||
| 2485 | restriction endonuclease subunit S | |||
| 2490 | R | TphKS1ORF2355P (99% identity) | TphB431ORF2455P | |
| 2495 | MFS transporter | |||
| 6155 | 142 aa hypothetical protein | |||
| 6160 | M | M.TphV1ORF40163P (99% identity) | M.TphB431ORF6160P | |
| 6165 | S | S.TphRORF4780P (81% identity) | S.TphB431ORF6160P | |
| 6170 | IS630 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 65 | M3 family oligoendopeptidase | |||
| 70 | M | M.TphS23ORF13395P (99% identity) | M.TphB431ORF70P | |
| 75 | 61 aa hypothetical protein | |||
| 270 | 184 aa hypothetical protein | |||
| 275 | M | M.TphKS1ORF285P (99% identity) | M.TphB431ORF275P | |
| 280 | M3 family oligoendopeptidase | |||
| 715 | 89 aa hypothetical protein | |||
| 720 | R | TphV1ORF290010P (100% identity) | TphB431ORF725P | |
| 725 | M | M.TphS85ORF11405P (100% identity) | M.TphB431ORF725P | |
| 730 | 229 aa hypothetical protein | |||
| 2075 | HAMP domain-containing protein | |||
| 2080 | M | M.TphV1ORF30139P (100% identity) | M.TphB431ORF2080P | |
| 2085 | 184 aa hypothetical protein | |||
| 2275 | phage head morphogenesis protein | |||
| 2280 | M | M.TphS23ORF3870P (98% identity) | M.TphB431ORF2280P | |
| 2285 | 129 aa hypothetical protein | |||
| 2935 | TIGR02678 family protein | |||
| 2940 | R | TphT320AORF9745P (100% identity) | TphB431ORF2945P | |
| 2945 | M | M1.TphS85ORF13995P (100% identity) | M1.TphB431ORF2945P | |
| 2950 | M | M2.TphV1ORF510001P (99% identity) | M2.TphB431ORF2945P | |
| 2955 | sucrose-6-phosphate hydrolase | |||
| 2990 | 193 aa hypothetical protein | |||
| 2995 | R | TphB365ORF14575P (96% identity) | TphB431ORF2995P | |
| 3000 | restriction endonuclease subunit M | |||
| 2995 | DUF262 domain-containing protein | |||
| 3000 | M | M.TphS85ORF14145P (92% identity) | M.TphB431ORF3000P | |
| 3005 | methyl-accepting chemotaxis protein | |||
| 3070 | 328 aa hypothetical protein | |||
| 3075 | M | M.TphS85ORF14070P (100% identity) | M.TphB431ORF3075P | |
| 3080 | 288 aa hypothetical protein | |||
| 3770 | 61 aa hypothetical protein | |||
| 3775 | M | M.TphS23ORF13395P (99% identity) | M.TphB431ORF13415P | |
| 3780 | 494 aa hypothetical protein | |||
| 3960 | leucine-rich repeat domain-containing protein | |||
| 3965 | M | M.TphV1ORF30070P (95% identity) | M.TphB431ORF3965P | |
| 3970 | restriction endonuclease | |||
| 5075 | 79 aa hypothetical protein | |||
| 5080 | M | M.TphS85ORF395P (99% identity) | M.TphB431ORF5080P | |
| 5085 | 98 aa hypothetical protein | |||
| 5090 | 73 aa hypothetical protein | |||
| 5095 | M | M.TphS85ORF380P (81% identity) | M.TphB431ORF5095P | |
| 5100 | single-stranded DNA-binding protein | |||
| 5140 | 273 aa hypothetical protein | |||
| 5145 | M | M.TphB431ORF8220P (100% identity) | M.TphB431ORF5145P | |
| 5150 | DUF4406 domain-containing protein | |||
| 5355 | 121 aa hypothetical protein | |||
| 5360 | S | S2.TphS23ORF10150P (100% identity) | S2.TphB431ORF5370P | |
| 5365 | S | S1.TphS23ORF7595P (98% identity) | S1.TphB431ORF5370P | |
| 5370 | RM | TphS85ORF7385P (99% identity) | TphB431ORF5370P | |
| 5375 | ImmA/IrrE family metallo-endopeptidase | |||
| 6430 | TdeIII family type II restriction endonuclease | |||
| 6435 | M | M.TphV1ORF40108P (100% identity) | M.TphB431ORF6435P | |
| 6440 | ABC transporter ATP-binding protein | |||
| 7030 | 329 aa hypothetical protein | |||
| 7035 | M | M.TphT320AORF14130P (99% identity) | M.TphB431ORF7035P | |
| 7040 | 148 aa hypothetical protein | |||
| 7230 | DUF3847 domain-containing protein | |||
| 7235 | R | TphS23ORF8205P (100% identity) | GATC | TphB431ORF7240P |
| 7240 | M | M.TphV1ORF20037P (100% identity) | GATC | M.TphB431ORF7240P |
| 7245 | C | C.TphV1ORF20037P (100% identity) | C.TphB431ORF7240P | |
| 7250 | replication initiator protein A | |||
| 8150 | 79 aa hypothetical protein | |||
| 8155 | M | M.TphT320AORF785P (100% identity) | M.TphB431ORF8155P | |
| 8160 | 98 aa hypothetical protein | |||
| 8165 | 73 aa hypothetical protein | |||
| 8170 | M | M.TphS85ORF380P (98% identity) | M.TphB431ORF8170P | |
| 8175 | single-stranded DNA-binding protein | |||
| 8215 | 273 aa hypothetical protein | |||
| 8220 | M | M.TphB431ORF5145P (100% identity) | M.TphB431ORF8220P | |
| 8225 | DUF4406 domain-containing protein | |||
| 8430 | 121 aa hypothetical protein | |||
| 8435 | S | S2.TphS23ORF10150P (100% identity) | S2.TphB431ORF8445P | |
| 8440 | S | S1.TphS23ORF10150P (99% identity) | S1.TphB431ORF8445P | |
| 8445 | RM | TphS85ORF7385P (99% identity) | TphB431ORF8445P | |
| 8450 | ImmA/IrrE family metallo-endopeptidase | |||
| 9140 | 167 aa hypothetical protein | |||
| 9145 | M | M.TphS23ORF10380P (99% identity) | M.TphB431ORF9145P | |
| 9150 | AAA family ATPase | |||
| 11170 | 555 aa hypothetical protein | |||
| 11175 | M | M.TphV1ORF260015P (100% identity) | M.TphB431ORF11175P | |
| 11180 | 172 aa hypothetical protein | |||
| 11695 | oxidoreductase | |||
| 11700 | M | M.TphB431ORF8220P (95% identity) | M.TphB431ORF11700P | |
| 11705 | DUF4406 domain-containing protein | |||
| 13625 | 184 aa hypothetical protein | |||
| 13630 | M | M.TphV1ORF30139P (100% identity) | M.TphB431ORF3570P | |
| 13635 | USG protein | |||
| 13645 | DUF4268 domain-containing protein | |||
| 13650 | M | M2.PmeBin164ORFDP (89% identity) | M1.TphB431ORF13650P | |
| 13655 | glutamyl-tRNA amidotransferase | |||
| 13660 | R | PmeBin279ORFAP (86% identity) | TphB431ORF13650P | |
| 13665 | 178 aa hypothetical protein | |||
| 13670 | M | M2.PmeBin721ORFAP (81% identity) | M2.TphB431ORF13650P | |
| 13675 | plasmid mobilization relaxosome protein MobC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1045 | 131 aa hypothetical protein | |||
| 1050 | M | M.TphV1ORF140026P (96% identity) | M.TphB431ORF1050P | |
| 1055 | R | TphV1ORF140026P (98% identity) | TphB431ORF1050P | |
| 1060 | IclR family transcriptional regulator | |||
| 6850 | alpha/beta fold hydrolase | |||
| 6855 | R | TphS85ORF3440P (100% identity) | TphB431ORF6860P | |
| 6860 | M | M.TphS85ORF3440P (100% identity) | M.TphB431ORF6860P | |
| 6865 | DUF4868 domain-containing protein | |||
| 7005 | helix-turn-helix transcriptional regulator | |||
| 7010 | M | M.TphV1ORF90053P (100% identity) | M.TphB431ORF7010P | |
| 7015 | 93 aa hypothetical protein | |||