Escherichia coli 042 |
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Putative Escherichia coli 042 RM systems
Ref: Endimiani,A. et al. unpublished
REBASE ref # 29277
Complete sequence: 4,692,707 bp
GenBank #: CP042934
REBASE acronym: Eco042S
Org_num: 36576
All begin FVF73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13465 | transposase | |||
| 13470 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco042SORF13470P |
| 13475 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco042SORF13470P |
| 13480 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco042SORF13470P |
| 13485 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9965 | drug/metabolite exporter YedA | |||
| 9970 | V | V.EcosEC7DcmP (100% identity) | V.Eco042SDcmP | |
| 9975 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco042SDcmP |
| 9980 | phosphohydrolase | |||
| 13305 | phage lysis protein EssD | |||
| 13310 | M | M.Sso63633ORF22290P (100% identity) | M.Eco042SORF13310P | |
| 13315 | TrmB family transcriptional regulator | |||
| 13350 | LexA family transcriptional regulator | |||
| 13355 | M | M.KpnHs33ORF24645P (100% identity) | GATC | M.Eco042SORF13355P |
| 13360 | PerC family transcriptional regulator | |||
| 13435 | ATP-binding protein | |||
| 13440 | M | M.Ecoi64ORF2425P (100% identity) | M.Eco042SORF13440P | |
| 13445 | tyrosine-type recombinase/integrase | |||
| 16655 | DNA-binding transcriptional regulator Fis | |||
| 16660 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco042SORF16660P |
| 16665 | DUF2556 domain-containing protein | |||
| 17285 | ribulose-phosphate 3-epimerase | |||
| 17290 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco042SDamP |
| 17295 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10120 | DUF4102 domain-containing protein | |||
| 10125 | M | M.Sensp14178ORF9290P (100% identity) | M.Eco042SORF10125P | |
| 10130 | R | Sensp14178ORF9290P (100% identity) | Eco042SORF10125P | |
| 10135 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6040 | recombinase family protein | |||
| 6045 | R | EcoteDMcrBP (100% identity) | Eco042SMcrB2P | |
| 6050 | R | EcosEC27McrCP (100% identity) | Eco042SMcrC2P | |
| 6055 | isocitrate dehydrogenase | |||