Escherichia coli CFSAN061772 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli CFSAN061772 RM systems
Ref: Hoffmann,M. and Hammad,A. unpublished
REBASE ref # 29297
| Sequence length: | GenBank #: | |
| Chromosome: | 4,667,689 bp | CP042893 |
| plasmid pCFSAN061772_01: | 141,344 bp | CP042894 |
| plasmid pCFSAN061772_02: | 258,004 bp | CP042895 |
REBASE acronym: Eco61772
Org_num: 36688
All begin CA901_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCFSAN061772_01 | ||||
| 23105 | 3-phosphatase | |||
| 23110 | R | Eco248ORF23255P (99% identity) | Eco61772ORF23120P | |
| 23115 | S | S.EcoR31ORF22360P (67% identity) | S.Eco61772ORF23120P | |
| 23120 | M | M2.Eco018ORF11590P (95% identity) | M.Eco61772ORF23120P | |
| 23125 | IS5-like element ISKpn26 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco61772DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2340 | DUF2556 domain-containing protein | |||
| 2345 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco61772ORF2345P |
| 2350 | DNA-binding transcriptional regulator Fis | |||
| 5500 | 44 aa hypothetical protein | |||
| 5505 | M | M.Sso8033ORF3755P (100% identity) | M.Eco61772ORF5505P | |
| 5510 | R | EcoTIF10ORFCP (99% identity) | Eco61772ORF5505P | |
| 5515 | pseudogene | |||
| 8785 | phosphohydrolase | |||
| 8790 | M | M.SflLIN6DcmP (99% identity) | CCWGG | M.Eco61772DcmP |
| 8795 | V | V.SsoST152DcmP (100% identity) | V.Eco61772DcmP | |
| 8800 | drug/metabolite exporter YedA | |||
| 14625 | 273 aa hypothetical protein | |||
| 14630 | M | M.EfeC18ORF7705P (100% identity) | M.Eco61772ORF14630P | |
| 14635 | TraR/DksA family transcriptional regulator | |||
| 14770 | 273 aa hypothetical protein | |||
| 14775 | M | M.EfeC18ORF7705P (100% identity) | M.Eco61772ORF14775P | |
| 14780 | TraR/DksA family transcriptional regulator | |||
| plasmid pCFSAN061772_01 | ||||
| 22865 | IS1 family transposase | |||
| 22870 | R | SflFF67ORF22305P (100% identity) | GCWGC | Eco61772ORF22870P |
| 22875 | helix-turn-helix transcriptional regulator | |||
| plasmid pCFSAN061772_02 | ||||
| 23645 | thermonuclease family protein | |||
| 23650 | M | M.YpsF1ORFCP (100% identity) | M.Eco61772ORF23650P | |
| 23655 | DUF1173 domain-containing protein | |||
| 24240 | 284 aa hypothetical protein | |||
| 24245 | M | M.YpsF1ORFDP (100% identity) | M.Eco61772ORF24245P | |
| 24250 | DNA-binding protein | |||
| 24380 | 202 aa hypothetical protein | |||
| 24385 | M | M.YpsF1ORFBP (100% identity) | M.Eco61772ORF24385P | |
| 24390 | 108 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12980 | isocitrate dehydrogenase | |||
| 12985 | R | EcoMB19ORF20745P (100% identity) | YCGR | Eco61772McrAP |
| 12990 | site-specific DNA recombinase | |||