Helicobacter pylori G-Mx-2006-46 |
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Putative Helicobacter pylori G-Mx-2006-46 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,632,652 bp
GenBank #: CP032046
REBASE acronym: Hpy646
Org_num: 37794
All begin D2C72_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1455 | RNA degradosome polyphosphate kinase | |||
| 1465 | S | S.HpyNCI32ORFA1P (100% identity) | S.Hpy646ORF1470P | |
| 1470 | M | M.HpyNCI32ORFA1P (100% identity) | M.Hpy646ORF1470P | |
| 1475 | R | HpyNCI32ORFA1P (100% identity) | Hpy646ORF1470P | |
| 1480 | DUF115 domain-containing protein | |||
| 3160 | 318 aa hypothetical protein | |||
| 3165 | S | S.HpyNCI32ORFUP (100% identity) | S.Hpy646ORF3165P | |
| 3170 | cadmium-translocating P-type ATPase | |||
| 3480 | hydroxyethylthiazole kinase | |||
| 3485 | R | HpyNCI32ORFSP (100% identity) | Hpy646ORF3495P | |
| 3490 | S | S.HpyNCI32ORFSP (100% identity) | S.Hpy646ORF3495P | |
| 3495 | M | M.HpyNCI32ORFSP (100% identity) | M.Hpy646ORF3495P | |
| 3500 | 0 aa hypothetical protein | |||
| 6310 | nickel transporter | |||
| 6315 | S | S.HpyNCI32ORFJP (100% identity) | CRTANNNNNNNTG | S.Hpy646ORF6315P |
| 6320 | formyltetrahydrofolate deformylase | |||
| 6840 | 303 aa hypothetical protein | |||
| 6845 | S | S.HpyNCI32ORFDP (100% identity) | CRTANNNNNNNTC | S.Hpy646ORF6850P |
| 6850 | M | M.HpyNCI32ORFDP (100% identity) | CRTANNNNNNNTC | M.Hpy646ORF6850P |
| 6855 | R | HpyNCI32ORFDP (96% identity) | CRTANNNNNNNTC | Hpy646ORF6850P |
| 6860 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 165 | elongation factor P | |||
| 170 | M | M.HpyNCI32ORFD1P (100% identity) | M.Hpy646ORF170P | |
| 175 | 256 aa hypothetical protein | |||
| 180 | R | HpyNCI32McrBP (100% identity) | R1.Hpy646ORF170P | |
| 185 | R | HpyNCI32ORFE1P (100% identity) | R2.Hpy646ORF170P | |
| 190 | pseudaminic acid synthase | |||
| 580 | exodeoxyribonuclease VII large subunit | |||
| 585 | R | HpyNCI32VIP (100% identity) | CCGG | Hpy646ORF590P |
| 590 | M | M.HpyNCI32VI (100% identity) | CCGG | M.Hpy646ORF590P |
| 595 | AAA family ATPase | |||
| 825 | polysaccharide deacetylase | |||
| 830 | R | HpySP207VIP (100% identity) | CTNAG | Hpy646ORF835P |
| 835 | M | M.HpySP207VI (100% identity) | CTNAG | M.Hpy646ORF835P |
| 840 | 123 aa hypothetical protein | |||
| 1550 | outer membrane beta-barrel protein | |||
| 1555 | M | M.HpyNCI32VII (100% identity) | ATTAAT | M.Hpy646ORF1555P |
| 1560 | lipopolysaccharide heptosyltransferase family | |||
| 1565 | translational GTPase TypA | |||
| 1570 | M | M.HpyNCI32ORFYP (100% identity) | ACNGT | M.Hpy646ORF1570P |
| 1575 | R | HpyNCI32ORFYP (100% identity) | ACNGT | Hpy646ORF1570P |
| 1580 | DNA cytosine methyltransferase | |||
| 1575 | GIY-YIG nuclease family protein | |||
| 1580 | M | M.HpyNCI32ORFZP (100% identity) | M.Hpy646ORF1580P | |
| 1585 | catalase | |||
| 1680 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI32ORFWP (100% identity) | GTAC | M.Hpy646ORFBP |
| ??? | R | HpyNCI32ORFWP (100% identity) | GTAC | Hpy646ORFBP |
| 1695 | M23 family peptidase | |||
| 2545 | (Fe-S)-binding protein | |||
| 2550 | RM | HpyNCI39ORFFP (82% identity) | Hpy646ORF2550P | |
| 2555 | outer membrane protein | |||
| 3320 | osmoprotection binding protein | |||
| 3325 | R | HpySP507IVP (100% identity) | CGWCG | Hpy646ORF3330P |
| 3330 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy646ORF3330P |
| 3335 | ABC transporter permease subunit | |||
| 3780 | flagellar hook protein FlgE | |||
| 3785 | R | HpyNCI32ORFRP (100% identity) | GTNNAC | Hpy646ORF3790P |
| 3790 | M | M.HpyCOL119ORF4535P (96% identity) | GTNNAC | M.Hpy646ORF3790P |
| 3795 | ATP-dependent helicase | |||
| 4585 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4590 | M | M.HpyNCI32V (100% identity) | TCNNGA | M.Hpy646ORF4590P |
| 4595 | R | HpyNCI32VP (100% identity) | TCNNGA | Hpy646ORF4590P |
| 4600 | Laminin subunit alpha-2 precursor | |||
| 4790 | 0 aa hypothetical protein | |||
| 4795 | M | M.HpyNCI32ORFPP (100% identity) | GCGC | M.Hpy646ORF4795P |
| 4800 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5250 | HAD family hydrolase | |||
| 5255 | M | M.HpyNCI32I (100% identity) | CATG | M.Hpy646ORF5255P |
| 5260 | R | HpyNCI32IP (100% identity) | CATG | Hpy646ORF5255P |
| 5265 | serine O-acetyltransferase | |||
| 5995 | S41 family peptidase | |||
| ??? | RM | HpyNCI32ORFNP (91% identity) | Hpy646ORF6000P | |
| 6010 | carboxylating nicotinate-nucleotide | |||
| 6060 | DNA-binding response regulator | |||
| 6065 | R | HpyNCI32IIP (96% identity) | Hpy646ORF6070P | |
| ??? | M | M.HpyNCI32II (100% identity) | GAAGA | M1.Hpy646ORF6070P |
| 6075 | M | M.HpyNCI32II (45% identity) | GAAGA | M2.Hpy646ORF6070P |
| 6080 | response regulator | |||
| 6510 | 713 aa hypothetical protein | |||
| 6515 | RM | HpyNCI32ORFHP (100% identity) | Hpy646ORF6515P | |
| 6520 | 176 aa hypothetical protein | |||
| 6600 | outer membrane protein | |||
| 6605 | R | HpyNCI32ORFFP (100% identity) | CCATC | Hpy646ORF6610P |
| 6610 | M | M1.HpyU424III (99% identity) | CCATC | M1.Hpy646ORF6610P |
| 6615 | M | M2.HpyNCI32ORFFP (100% identity) | CCATC | M2.Hpy646ORF6610P |
| 6620 | YjgP/YjgQ family permease | |||
| 6745 | ComF family protein | |||
| 6750 | RM | HpyME04ORF7220P (97% identity) | Hpy646ORF6750P | |
| 6755 | S | S.HpyNCI32ORFEP (100% identity) | S.Hpy646ORF6750P | |
| 6760 | DNA polymerase I | |||
| 6935 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyNCI32IV (100% identity) | TGCA | M.Hpy646ORFAP |
| 6945 | R | HpyNCI32IVP (100% identity) | TGCA | Hpy646ORFAP |
| 6950 | cytochrome c1 | |||
| 7490 | agmatine deiminase | |||
| 7495 | M | M1.HpyNCI32ORFBP (100% identity) | CCTC | M1.Hpy646ORF7495P |
| 7500 | M | M2.HpyNCI32ORFBP (100% identity) | M2.Hpy646ORF7495P | |
| 7505 | sodium/proline symporter PutP | |||
| 7680 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7690 | R | HpyNCI32IIIP (100% identity) | GATC | Hpy646ORF7695P |
| 7695 | M | M.HpyNCI32III (100% identity) | GATC | M.Hpy646ORF7695P |
| 7700 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6080 | response regulator | |||
| 6085 | M | M.HpyNCI32ORFMP (100% identity) | M.Hpy646ORF6085P | |
| 6090 | R | HpyNCI32ORFMP (100% identity) | Hpy646ORF6085P | |
| 6095 | rod shape-determining protein MreC | |||
| 6145 | DNA/RNA non-specific endonuclease | |||
| 6150 | M | M.HpyNCI32ORFKP (94% identity) | M.Hpy646ORF6150P | |
| 6155 | R | HpyNCI32ORFKP (97% identity) | Hpy646ORF6150P | |
| 6160 | biotin synthase | |||
| 6495 | ATP-dependent DNA helicase RecG | |||
| 6500 | M | M.HpyNCI32ORFGP (100% identity) | M.Hpy646ORF6500P | |
| 6505 | R | HpyNCI32ORFGP (100% identity) | Hpy646ORF6500P | |
| 6510 | 713 aa hypothetical protein | |||