Helicobacter pylori G-Mx-2003-108 |
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Putative Helicobacter pylori G-Mx-2003-108 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,667,946 bp
GenBank #: CP032044
REBASE acronym: Hpy3108
Org_num: 37788
All begin D2C73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 770 | M48 family peptidase | |||
| 775 | R | HpyNCI23ORFA1P (100% identity) | Hpy3108ORF780P | |
| 780 | M | M.HpyNCI23ORFA1P (100% identity) | M.Hpy3108ORF780P | |
| 785 | S | S.HpyNCI23ORFA1P (100% identity) | S.Hpy3108ORF780P | |
| 790 | cag pathogenicity island protein | |||
| 4155 | type I restriction endonuclease | |||
| 4160 | M | M.HpyNCI23ORFMP (92% identity) | M.Hpy3108ORF4160P | |
| 4165 | S | S.HpyNCI23ORFMP (100% identity) | S.Hpy3108ORF4160P | |
| 4170 | R | HpyNCI23ORFMP (100% identity) | Hpy3108ORF4160P | |
| 4175 | hydroxyethylthiazole kinase | |||
| 6115 | DUF115 domain-containing protein | |||
| 6120 | R | HpyNCI23ORFFP (100% identity) | Hpy3108ORF6125P | |
| 6125 | M | M.HpyNCI23ORFFP (100% identity) | M.Hpy3108ORF6125P | |
| 6130 | S | S.HpyNCI23ORFFP (100% identity) | S.Hpy3108ORF6125P | |
| 6140 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 455 | DUF1887 domain-containing protein | |||
| 460 | M | M.HpySP323ORF7885P (100% identity) | M.Hpy3108ORF460P | |
| 465 | 366 aa hypothetical protein | |||
| 1085 | ComF family protein | |||
| 1090 | RM | HpyNCI23ORFXAP (100% identity) | Hpy3108ORF1090P | |
| 1095 | S | S.HpyDO10ORF7190P (78% identity) | S.Hpy3108ORF1090P | |
| 1100 | DNA polymerase I | |||
| 1145 | addiction module antidote protein | |||
| 1150 | M | M1.HpyNCI23ORFWP (100% identity) | M.Hpy3108ORF1150P | |
| 1155 | DNA (cytosine-5-)-methyltransferase | |||
| 1150 | DNA (cytosine-5-)-methyltransferase | |||
| 1155 | M | M2.HpyNCI23ORFWP (100% identity) | M.Hpy3108ORF1155P | |
| 1160 | R | HpyNCI23ORFWP (100% identity) | Hpy3108ORF1155P | |
| 1165 | cytochrome-c peroxidase | |||
| 1630 | site-specific DNA-methyltransferase | |||
| 1635 | M | M2.Hpyfe78ORF7125P (99% identity) | GAAGA | M1.Hpy3108ORF1635P |
| 1640 | M | M2.HpyNCI23II (100% identity) | GAAGA | M2.Hpy3108ORF1635P |
| 1645 | R | HpyNCI23IIP (100% identity) | GAAGA | Hpy3108ORF1635P |
| 1650 | DNA-binding response regulator | |||
| 1700 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyNCI23ORFRP (92% identity) | Hpy3108ORF1705P | |
| 1710 | site-specific DNA-methyltransferase | |||
| 1705 | DNA methyltransferase | |||
| 1710 | M | M.HpyNCI23IV (100% identity) | GANTC | M.Hpy3108ORF1710P |
| 1715 | R | HpyNCI23IVP (100% identity) | GANTC | Hpy3108ORF1710P |
| 1720 | S41 family peptidase | |||
| 2445 | serine O-acetyltransferase | |||
| 2450 | R | HpyNCI23IP (100% identity) | CATG | Hpy3108ORF2455P |
| 2455 | M | M.HpyNCI23I (100% identity) | CATG | M.Hpy3108ORF2455P |
| 2460 | HAD family hydrolase | |||
| 2940 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2945 | M | M.HpyNCI23ORFPP (100% identity) | M.Hpy3108ORF2945P | |
| 2950 | 144 aa hypothetical protein | |||
| 3140 | Laminin subunit alpha-2 precursor | |||
| 3145 | R | HpySP206XP (100% identity) | TCNNGA | Hpy3108ORF3150P |
| 3150 | M | M.HpyNCI23VI (100% identity) | TCNNGA | M.Hpy3108ORF3150P |
| 3155 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3845 | ATP-dependent helicase | |||
| 3850 | M | M.HpyBR18IX (96% identity) | GTNNAC | M.Hpy3108ORF3850P |
| 3855 | R | HpyNCI23ORFNP (100% identity) | GTNNAC | Hpy3108ORF3850P |
| 3860 | flagellar hook protein FlgE | |||
| 5055 | 486 aa hypothetical protein | |||
| 5060 | RM | HpySP310ORF3470P (91% identity) | Hpy3108ORF5060P | |
| 5065 | (Fe-S)-binding protein | |||
| 6005 | catalase | |||
| 6010 | M | M.HpyNCI23ORFGP (100% identity) | M.Hpy3108ORF6010P | |
| 6015 | GIY-YIG nuclease family protein | |||
| 6010 | DNA cytosine methyltransferase | |||
| 6015 | R | HpySP312IIP (100% identity) | ACNGT | Hpy3108ORF6020P |
| 6020 | M | M.HpySP319II (100% identity) | ACNGT | M.Hpy3108ORF6020P |
| 6025 | translational GTPase TypA | |||
| 6030 | lipopolysaccharide heptosyltransferase family | |||
| 6035 | M | M.HpyNCI23VIII (100% identity) | ATTAAT | M.Hpy3108ORF6035P |
| 6040 | outer membrane beta-barrel protein | |||
| 7015 | AAA family ATPase | |||
| 7020 | M | M.HpyNCI23IX (100% identity) | CCGG | M.Hpy3108ORF7020P |
| ??? | R | Hpy2012ORF5380P (96% identity) | CCGG | Hpy3108ORF7020P |
| 7030 | 80 aa hypothetical protein | |||
| 7030 | 80 aa hypothetical protein | |||
| 7035 | M | M.HpyME43II (99% identity) | TCGA | M.Hpy3108ORF7035P |
| 7040 | exodeoxyribonuclease VII large subunit | |||
| 7880 | alpha-1,2-fucosyltransferase | |||
| 7885 | M | M.HpyNCI23III (100% identity) | GATC | M.Hpy3108ORF7885P |
| 7890 | 330 aa hypothetical protein | |||
| 8075 | sodium/proline symporter PutP | |||
| 8080 | M | M.HpyNCI23ORFAP (100% identity) | CCTTC | M.Hpy3108ORF8080P |
| 8085 | R | HpyNCI23ORFAP (100% identity) | CCTTC | Hpy3108ORF8080P |
| 8090 | DNA cytosine methyltransferase | |||
| 8085 | restriction endonuclease | |||
| 8090 | M | M2.HpySP18IX (100% identity) | CCTC | M1.Hpy3108ORF8090P |
| 8095 | site-specific DNA-methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 845 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyNCI23ORFYP (100% identity) | M.Hpy3108ORF850P | |
| 860 | R | HpyNCI23ORFYP (100% identity) | Hpy3108ORF850P | |
| 865 | 719 aa hypothetical protein | |||
| 1550 | 61 aa hypothetical protein | |||
| 1555 | R | HpyNCI23ORFVP (97% identity) | Hpy3108ORF1560P | |
| 1560 | M | M.HpyNCI23ORFVP (100% identity) | M.Hpy3108ORF1560P | |
| 1565 | DNA/RNA non-specific endonuclease | |||
| 1620 | rod shape-determining protein MreC | |||
| 1625 | R | HpyNCI23ORFTP (100% identity) | Hpy3108ORF1630P | |
| 1630 | M | M.HpyNCI23ORFTP (100% identity) | M.Hpy3108ORF1630P | |
| 1635 | site-specific DNA-methyltransferase | |||