Helicobacter pylori G-Mx-2005-108 |
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Putative Helicobacter pylori G-Mx-2005-108 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,654,849 bp
GenBank #: CP032042
REBASE acronym: Hpy5108
Org_num: 37791
All begin D2C75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 690 | RNA degradosome polyphosphate kinase | |||
| 700 | S | S.HpyNCI25ORFE1P (100% identity) | S.Hpy5108ORF705P | |
| 705 | M | M.HpyNCI25ORFE1P (100% identity) | M.Hpy5108ORF705P | |
| 710 | R | HpyNCI25ORFE1P (100% identity) | Hpy5108ORF705P | |
| 715 | DUF115 domain-containing protein | |||
| 2360 | outer membrane beta-barrel protein HofF | |||
| 2365 | S | S.HpyNCI25ORFYP (100% identity) | S.Hpy5108ORF2365P | |
| 2370 | cadmium-translocating P-type ATPase | |||
| 2645 | hydroxyethylthiazole kinase | |||
| 2650 | R | HpyNCI25ORFXP (100% identity) | Hpy5108ORF2660P | |
| 2655 | S | S.HpyNCI25ORFXP (100% identity) | S.Hpy5108ORF2660P | |
| 2660 | M | M.HpyNCI25ORFXP (92% identity) | M.Hpy5108ORF2660P | |
| 2665 | type I restriction endonuclease | |||
| 6105 | cag pathogenicity island protein | |||
| 6110 | S | S.HpyNCI25ORFFP (100% identity) | S.Hpy5108ORF6115P | |
| 6115 | M | M.HpyNCI25ORFFP (100% identity) | M.Hpy5108ORF6115P | |
| 6120 | R | HpyNCI25ORFFP (100% identity) | Hpy5108ORF6115P | |
| 6125 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 780 | outer membrane protein | |||
| 785 | M | M.HpyNCI25ORFB1P (100% identity) | ATTAAT | M.Hpy5108ORF785P |
| 790 | lipopolysaccharide heptosyltransferase family | |||
| 795 | translational GTPase TypA | |||
| 800 | M | M.HpyU004II (100% identity) | ACNGT | M.Hpy5108ORF800P |
| 805 | R | HpyU004IIP (100% identity) | ACNGT | Hpy5108ORF800P |
| 810 | DNA cytosine methyltransferase | |||
| 805 | GIY-YIG nuclease family protein | |||
| 810 | M | M.HpyPE103ORF2230P (98% identity) | ACGT | M.Hpy5108ORF810P |
| ??? | R | HpyFD719ORF6945P (72% identity) | ACGT | Hpy5108ORF810P |
| 820 | catalase | |||
| 915 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI25ORFA1P (100% identity) | GTAC | M.Hpy5108ORFBP |
| 925 | R | HpyNCI25ORFA1P (95% identity) | GTAC | Hpy5108ORFBP |
| 930 | M23 family peptidase | |||
| 1765 | (Fe-S)-binding protein | |||
| 1770 | RM | HpyNCI25ORFZP (100% identity) | Hpy5108ORF1770P | |
| 1775 | outer membrane protein | |||
| 2935 | flagellar hook protein FlgE | |||
| 2940 | R | HpyNCI25VIIIP (100% identity) | GTNNAC | Hpy5108ORF2945P |
| 2945 | M | M.HpySP15II (97% identity) | GTNNAC | M.Hpy5108ORF2945P |
| 2950 | ATP-dependent helicase | |||
| 3655 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3660 | M | M.HpyNCI25IX (100% identity) | TCNNGA | M.Hpy5108ORF3660P |
| 3665 | R | HpyNCI25IXP (100% identity) | TCNNGA | Hpy5108ORF3660P |
| 3670 | Laminin subunit alpha-2 precursor | |||
| 3855 | 144 aa hypothetical protein | |||
| 3860 | M | M.HpyNCI25ORFUP (100% identity) | GCGC | M.Hpy5108ORF3860P |
| 3865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4345 | HAD family hydrolase | |||
| 4350 | M | M.HpyNCI25I (100% identity) | CATG | M.Hpy5108ORF4350P |
| ??? | R | HpyID9IP (77% identity) | CATG | Hpy5108ORF4350P |
| 4365 | serine O-acetyltransferase | |||
| 5095 | adenine specific DNA methyltransferase | |||
| 5100 | R | HpyNCI25IVP (100% identity) | GANTC | Hpy5108ORF5105P |
| 5105 | M | M.HpyNCI25IV (100% identity) | GANTC | M.Hpy5108ORF5105P |
| 5110 | DNA methyltransferase | |||
| 5105 | site-specific DNA-methyltransferase | |||
| 5110 | RM | HpyNCI25ORFSP (100% identity) | Hpy5108ORF5110P | |
| 5115 | carboxylating nicotinate-nucleotide | |||
| 5165 | DNA-binding response regulator | |||
| ??? | R | HpyNCI25ORFQP (80% identity) | Hpy5108ORF5170P | |
| ??? | M | M.HpyID9ORF6420P (99% identity) | M.Hpy5108ORF5170P | |
| 5175 | 115 aa hypothetical protein | |||
| 5400 | site-specific DNA-methyltransferase | |||
| 5405 | M | M.HpyID9ORF6650P (99% identity) | GAAGA | M.Hpy5108ORF5405P |
| 5410 | 105 aa hypothetical protein | |||
| 5795 | DNA polymerase I | |||
| 5800 | S | S.HpyH024ORF6870P (77% identity) | S.Hpy5108ORF5805P | |
| 5805 | RM | HpyNCI25ORFIP (100% identity) | Hpy5108ORF5805P | |
| 5810 | ComF family protein | |||
| 6030 | 173 aa hypothetical protein | |||
| 6035 | RM | HpyNCI25ORFGP (96% identity) | Hpy5108ORF6035P | |
| 6040 | DEAD/DEAH box helicase | |||
| 6210 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyNCI25II (100% identity) | TGCA | M.Hpy5108ORFAP |
| 6220 | R | HpyNCI25IIP (100% identity) | TGCA | Hpy5108ORFAP |
| 6225 | cytochrome c1 | |||
| 6765 | agmatine deiminase | |||
| 6770 | M | M1.HpyU004VI (100% identity) | CCTC | M1.Hpy5108ORF6770P |
| 6775 | M | M2.HpyID9VIP (100% identity) | CCTC | M2.Hpy5108ORF6770P |
| 6780 | sodium/proline symporter PutP | |||
| 6975 | 327 aa hypothetical protein | |||
| 6980 | M | M.HpyNCI25III (100% identity) | GATC | M.Hpy5108ORF6980P |
| 6985 | alpha-1,2-fucosyltransferase | |||
| 7825 | exodeoxyribonuclease VII large subunit | |||
| 7830 | M | M.HpyNCI25ORFAP (93% identity) | TCGA | M.Hpy5108ORF7830P |
| 7835 | 204 aa hypothetical protein | |||
| 7835 | 204 aa hypothetical protein | |||
| 7840 | R | Hpy449ORF6105P (98% identity) | CCGG | Hpy5108ORF7845P |
| 7845 | M | M.HpyNCI25VI (100% identity) | CCGG | M.Hpy5108ORF7845P |
| 7850 | AAA family ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5390 | rod shape-determining protein MreC | |||
| 5395 | R | HpyNCI25ORFMP (100% identity) | Hpy5108ORF5400P | |
| 5400 | M | M.HpyNCI25ORFMP (97% identity) | M.Hpy5108ORF5400P | |
| 5405 | site-specific DNA-methyltransferase | |||
| 5430 | relaxase | |||
| 5435 | M | M.HpyNCI25ORFOP (100% identity) | M.Hpy5108ORF5435P | |
| 5440 | R | HpyNCI25ORFOP (98% identity) | Hpy5108ORF5435P | |
| 5445 | biotin synthase | |||
| 6035 | class I SAM-dependent DNA methyltransferase | |||
| 6040 | R | HpyNCI25ORFHP (100% identity) | Hpy5108ORF6045P | |
| 6045 | M | M.HpyNCI25ORFHP (100% identity) | M.Hpy5108ORF6045P | |
| 6050 | ATP-dependent DNA helicase RecG | |||