Helicobacter pylori G-Mx-2011-147 |
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Putative Helicobacter pylori G-Mx-2011-147 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,667,329 bp
GenBank #: CP032037
REBASE acronym: Hpy1147
Org_num: 37797
All begin D2C80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2255 | 303 aa hypothetical protein | |||
| 2260 | S | S.HpyNCI55XIV (100% identity) | CRTANNNNNNRTTT | S.Hpy1147ORF2265P |
| 2265 | M | M.HpyNCI55XIV (100% identity) | CRTANNNNNNRTTT | M.Hpy1147ORF2265P |
| 2270 | R | HpyNCI55XIVP (100% identity) | CRTANNNNNNRTTT | Hpy1147ORF2265P |
| 2275 | M48 family peptidase | |||
| 4870 | RNA degradosome polyphosphate kinase | |||
| 4880 | S | S.HpyNCI55ORFKP (100% identity) | S.Hpy1147ORF4885P | |
| 4885 | M | M.HpyNCI55ORFKP (100% identity) | M.Hpy1147ORF4885P | |
| 4890 | R | HpyNCI55ORFKP (98% identity) | Hpy1147ORF4885P | |
| 4895 | helicase | |||
| 6780 | outer membrane beta-barrel protein HofF | |||
| 6785 | S | S.HpyNCI55XV (100% identity) | S.Hpy1147ORF6785P | |
| 6790 | cadmium-translocating P-type ATPase | |||
| 7090 | hydroxyethylthiazole kinase | |||
| 7095 | R | HpyNCI55XVIP (100% identity) | AAAYNNNNNNTAYG | Hpy1147ORF7105P |
| 7100 | S | S.HpyNCI55XVI (100% identity) | AAAYNNNNNNTAYG | S.Hpy1147ORF7105P |
| 7105 | M | M.HpyNCI55XVI (91% identity) | AAAYNNNNNNTAYG | M.Hpy1147ORF7105P |
| 7110 | type I restriction endonuclease subunit M | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 195 | 144 aa hypothetical protein | |||
| 200 | M | M.HpyNCI55ORFC1P (100% identity) | M.Hpy1147ORF200P | |
| 205 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 675 | HAD family hydrolase | |||
| 680 | M | M.HpyNCI55I (100% identity) | CATG | M.Hpy1147ORF680P |
| ??? | R | HpyNCI55IP (96% identity) | CATG | Hpy1147ORF680P |
| 690 | serine acetyltransferase | |||
| 1430 | S41 family peptidase | |||
| 1435 | R | HpyNCI55ORFZP (100% identity) | Hpy1147ORF1440P | |
| 1440 | M | M.HpySP707VII (63% identity) | M.Hpy1147ORF1440P | |
| 1445 | DNA methyltransferase | |||
| 1440 | site-specific DNA-methyltransferase | |||
| 1445 | RM | HpyNCI55ORFA1P (91% identity) | Hpy1147ORF1445P | |
| 1450 | carboxylating nicotinate-nucleotide | |||
| 1925 | 716 aa hypothetical protein | |||
| 1930 | RM | HpyNCI55ORFVP (97% identity) | Hpy1147ORF1930P | |
| 1935 | 184 aa hypothetical protein | |||
| 2015 | outer membrane protein | |||
| 2020 | R | HpyNCI55XIIP (100% identity) | CCATC | Hpy1147ORF2025P |
| 2025 | M | M2.HpyNCI55XII (100% identity) | CCATC | M1.Hpy1147ORF2025P |
| 2030 | M | M1.HpyNG06III (100% identity) | CCATC | M2.Hpy1147ORF2025P |
| 2035 | YjgP/YjgQ family permease | |||
| 2160 | ComF family protein | |||
| 2165 | RM | HpyNCI55ORFSP (100% identity) | Hpy1147ORF2165P | |
| 2170 | S | S.HpyNCI55ORFSP (100% identity) | S.Hpy1147ORF2165P | |
| 2175 | DNA polymerase I | |||
| 2370 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyNCI55II (100% identity) | TGCA | M.Hpy1147ORFAP |
| 2380 | R | HpyNCI55IIP (100% identity) | TGCA | Hpy1147ORFAP |
| 2385 | cytochrome c1 | |||
| 2900 | agmatine deiminase | |||
| 2905 | M | M1.HpyNCI55VIII (100% identity) | CCTC | M1.Hpy1147ORF2905P |
| 2910 | M | M2.HpyNCI55VIIIP (100% identity) | CCTC | M2.Hpy1147ORF2905P |
| 2915 | R | HpyNCI55VIIIP (99% identity) | CCTC | Hpy1147ORF2905P |
| 2920 | 60 aa hypothetical protein | |||
| 2915 | HNH endonuclease | |||
| 2925 | M | M.HpyNCI55ORFPP (99% identity) | GTSAC | M.Hpy1147ORF2925P |
| 2930 | R | HpyI018XP (100% identity) | GTSAC | Hpy1147ORF2925P |
| 2935 | DNA cytosine methyltransferase | |||
| 3135 | 0 aa hypothetical protein | |||
| 3140 | M | M.HpyNCI55III (100% identity) | GATC | M.Hpy1147ORF3140P |
| 3145 | alpha-1,2-fucosyltransferase | |||
| 3995 | exodeoxyribonuclease VII large subunit | |||
| 4000 | M | M.HpyNCI55IV (93% identity) | TCGA | M.Hpy1147ORF4000P |
| 4005 | 204 aa hypothetical protein | |||
| 4005 | 204 aa hypothetical protein | |||
| ??? | R | HpyH002IIIP (97% identity) | CCGG | Hpy1147ORF4015P |
| 4015 | M | M.HpyNCI55VII (100% identity) | CCGG | M.Hpy1147ORF4015P |
| 4020 | AAA family ATPase | |||
| 5230 | outer membrane beta-barrel protein | |||
| 5235 | M | M.HpyNCI55IX (100% identity) | ATTAAT | M.Hpy1147ORF5235P |
| 5240 | lipopolysaccharide heptosyltransferase family | |||
| 5245 | translational GTPase TypA | |||
| 5250 | M | M.HpyNCI55XI (100% identity) | ACNGT | M.Hpy1147ORF5250P |
| 5255 | R | HpyNCI55XIP (100% identity) | ACNGT | Hpy1147ORF5250P |
| 5260 | DNA cytosine methyltransferase | |||
| 5255 | GIY-YIG nuclease family protein | |||
| 5260 | M | M.HpyNCI55ORFJP (100% identity) | M.Hpy1147ORF5260P | |
| 5270 | catalase | |||
| 5360 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI55VI (99% identity) | GTAC | M.Hpy1147ORF5365P |
| 5370 | R | HpyNCI55VIP (95% identity) | GTAC | Hpy1147ORF5365P |
| 5375 | M23 family peptidase | |||
| 6190 | (Fe-S)-binding protein | |||
| 6195 | RM | HpyNCI55ORFGAP (82% identity) | Hpy1147ORF6195P | |
| 6200 | SIR2 family protein | |||
| 6280 | 3-5 exonuclease | |||
| 6285 | M | M.HpySWT01VIII (100% identity) | CCNNGG | M.Hpy1147ORF6285P |
| 6290 | R | HpyNCI55XP (100% identity) | CCNNGG | Hpy1147ORF6285P |
| 6295 | 3-5 exonuclease | |||
| 6930 | osmoprotection binding protein | |||
| 6935 | R | HpySP507IVP (100% identity) | CGWCG | Hpy1147ORF6940P |
| 6940 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy1147ORF6940P |
| 6945 | ABC transporter permease subunit | |||
| 7400 | flagellar hook protein FlgE | |||
| 7405 | R | HpyNCI55VP (100% identity) | GTNNAC | Hpy1147ORF7410P |
| 7410 | M | M.HpySP103X (98% identity) | GTNNAC | M.Hpy1147ORF7410P |
| 7415 | ATP-dependent helicase | |||
| 8095 | acetyl-CoA carboxylase biotin carboxylase | |||
| 8100 | M | M.HpySP08IV (95% identity) | TCNNGA | M.Hpy1147ORF8100P |
| 8105 | R | HpyNCI55ORFAP (100% identity) | TCNNGA | Hpy1147ORF8100P |
| 8110 | Laminin subunit alpha-2 precursor | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1500 | DNA-binding response regulator | |||
| 1505 | M | M.HpyNCI55ORFXP (98% identity) | M.Hpy1147ORF1505P | |
| 1510 | R | HpyNCI55ORFXP (100% identity) | Hpy1147ORF1505P | |
| 1515 | rod shape-determining protein MreC | |||
| 1565 | DNA/RNA non-specific endonuclease | |||
| 1570 | M | M.HpyNCI55XVII (100% identity) | M.Hpy1147ORF1570P | |
| 1575 | R | HpyNCI55XVIIP (96% identity) | Hpy1147ORF1570P | |
| 1580 | biotin synthase | |||
| 1910 | ATP-dependent DNA helicase RecG | |||
| 1915 | M | M.HpyNCI55ORFUP (100% identity) | M.Hpy1147ORF1915P | |
| 1920 | R | HpyNCI55ORFUP (100% identity) | Hpy1147ORF1915P | |
| 1925 | 716 aa hypothetical protein | |||