Helicobacter pylori C-Mx-2010-97 |
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Putative Helicobacter pylori C-Mx-2010-97 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,624,459 bp
GenBank #: CP032036
REBASE acronym: Hpy201097
Org_num: 37783
All begin D2C81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2635 | M48 family peptidase | |||
| 2640 | R | HpyNCI16ORFYP (100% identity) | Hpy201097ORF2645P | |
| 2645 | M | M.HpyNCI16ORFYP (98% identity) | M.Hpy201097ORF2645P | |
| 2650 | S | S.HpyH012ORF6575P (98% identity) | S.Hpy201097ORF2645P | |
| 2655 | FAD-dependent thymidylate synthase | |||
| 4955 | type I restriction endonuclease subunit M | |||
| 4960 | M | M.HpyNCI16ORFLP (100% identity) | M.Hpy201097ORF4960P | |
| 4965 | S | S.HpyNCI16ORFLP (100% identity) | S.Hpy201097ORF4960P | |
| ??? | R | HpyNCI16ORFLP (100% identity) | Hpy201097ORF4960P | |
| 4980 | hydroxyethylthiazole kinase | |||
| 5265 | CAAX protease | |||
| 5270 | S | S.HpyNCI16ORFJP (100% identity) | S.Hpy201097ORF5270P | |
| 5275 | outer membrane beta-barrel protein HofF | |||
| 6905 | DUF115 domain-containing protein | |||
| ??? | R | HpyNCI16ORFDP (100% identity) | Hpy201097ORF6920P | |
| 6920 | M | M.HpyNCI16ORFDP (100% identity) | M.Hpy201097ORF6920P | |
| 6925 | S | S.HpyNCI16ORFDP (100% identity) | S.Hpy201097ORF6920P | |
| 6930 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1065 | methyltransferase | |||
| 1070 | M | M.HpyNCI16ORFF1P (100% identity) | TCNNGA | M.Hpy201097ORF1070P |
| 1075 | R | HpyNCI16ORFF1P (100% identity) | TCNNGA | Hpy201097ORF1070P |
| 1080 | Laminin subunit alpha-2 precursor | |||
| 1265 | 144 aa hypothetical protein | |||
| 1270 | M | M.HpyNCI16ORFE1P (100% identity) | M.Hpy201097ORF1270P | |
| 1275 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1555 | 68 aa hypothetical protein | |||
| 1560 | M | M.HpyNCI16IV (99% identity) | TCNGA | M.Hpy201097ORF1560P |
| 1565 | R | HpyNCI16IVP (97% identity) | TCNGA | Hpy201097ORF1560P |
| 1570 | purine-nucleoside phosphorylase | |||
| 1745 | HAD family hydrolase | |||
| 1750 | M | M.HpyNCI16I (93% identity) | CATG | M.Hpy201097ORF1750P |
| 1755 | IceA2 protein | |||
| 2475 | PDZ domain-containing protein | |||
| 2480 | R | HpyNCI16ORFA1P (100% identity) | GANTC | Hpy201097ORF2485P |
| 2485 | M | M.HpyNCI16ORFA1P (100% identity) | GANTC | M.Hpy201097ORF2485P |
| 2490 | DNA methyltransferase | |||
| 2485 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyNCI16ORFB1P (92% identity) | Hpy201097ORF2490P | |
| 2495 | carboxylating nicotinate-nucleotide | |||
| 2545 | DNA-binding response regulator | |||
| ??? | R | HpyPE13XIVP (100% identity) | TGCA | Hpy201097ORF2555P |
| 2555 | M | M.HpyNCI16V (100% identity) | TGCA | M.Hpy201097ORF2555P |
| 2560 | 68 aa hypothetical protein | |||
| 2715 | DEAD/DEAH box helicase | |||
| 2720 | RM | HpyNCI16ORFXP (100% identity) | Hpy201097ORF2720P | |
| 2725 | 69 aa hypothetical protein | |||
| 2940 | ComF family protein | |||
| 2945 | RM | HpyNCI16ORFVP (100% identity) | Hpy201097ORF2945P | |
| 2950 | S | S.HpyCO8ORF6940P (95% identity) | S.Hpy201097ORF2945P | |
| 2955 | DNA polymerase I | |||
| 3000 | addiction module antidote protein | |||
| 3005 | M | M1.HpyNCI16ORFUP (100% identity) | M.Hpy201097ORF3005P | |
| 3010 | DNA (cytosine-5-)-methyltransferase | |||
| 3005 | DNA (cytosine-5-)-methyltransferase | |||
| 3010 | M | M2.HpyNCI16ORFUP (100% identity) | M.Hpy201097ORF3010P | |
| 3015 | R | HpyNCI16ORFUP (100% identity) | Hpy201097ORF3010P | |
| 3020 | cytochrome-c peroxidase | |||
| 3430 | response regulator | |||
| 3435 | M | M.HpyU420ORF7375P (98% identity) | M.Hpy201097ORF3435P | |
| 3440 | glycosyltransferase family 8 protein | |||
| 3980 | agmatine deiminase | |||
| 3985 | M | M1.HpyNCI16ORFPP (100% identity) | CCTC | M1.Hpy201097ORF3985P |
| 3990 | M | M2.HpyNCI16ORFPP (98% identity) | M2.Hpy201097ORF3985P | |
| ??? | R | HpyNCI16ORFPP (100% identity) | Hpy201097ORF3985P | |
| 4005 | adenine/cytosine DNA methyltransferase | |||
| 4185 | [acyl-carrier-protein] S-malonyltransferase | |||
| 4195 | R | HpyNCI16VIIP (100% identity) | GATC | Hpy201097ORF4200P |
| 4200 | M | M.HpyNCI16VII (100% identity) | GATC | M.Hpy201097ORF4200P |
| 4205 | alpha-1,2-fucosyltransferase | |||
| 4260 | HNH endonuclease | |||
| 4265 | M | M.HpySP314XVI (99% identity) | M.Hpy201097ORF4265P | |
| 4270 | HAMP domain-containing protein | |||
| 4660 | ATP-dependent helicase | |||
| 4665 | M | M.HpyU311X (97% identity) | GTNNAC | M.Hpy201097ORF4665P |
| ??? | R | HpyNCI16IIP (96% identity) | GTNNAC | Hpy201097ORF4665P |
| 4675 | flagellar hook protein FlgE | |||
| 5865 | 453 aa hypothetical protein | |||
| 5870 | RM | HpyNCI28ORFWP (88% identity) | Hpy201097ORF5870P | |
| 5875 | (Fe-S)-binding protein | |||
| 6690 | M23 family peptidase | |||
| ??? | R | HpyNCI16IIIP (100% identity) | GTAC | Hpy201097ORF6700P |
| ??? | M | M.HpyNCI16III (99% identity) | GTAC | M.Hpy201097ORF6700P |
| 6705 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 6795 | DUF262 domain-containing protein | |||
| ??? | R | HpyNCI16ORFEP (73% identity) | ACGT | Hpy201097ORF6805P |
| 6805 | M | M.HpyNCI16ORFEP (100% identity) | ACGT | M.Hpy201097ORF6805P |
| 6810 | GIY-YIG nuclease family protein | |||
| 6805 | DNA cytosine methyltransferase | |||
| 6810 | R | HpyNCI16ORFFP (100% identity) | ACNGT | Hpy201097ORF6815P |
| 6815 | M | M.HpyNCI16ORFFP (100% identity) | ACNGT | M.Hpy201097ORF6815P |
| 6820 | translational GTPase TypA | |||
| 6825 | lipopolysaccharide heptosyltransferase family | |||
| 6830 | M | M.HpyNCI16ORFGP (100% identity) | ATTAAT | M.Hpy201097ORF6830P |
| 6835 | outer membrane beta-barrel protein | |||
| 7365 | 92 aa hypothetical protein | |||
| 7370 | M | M.HpyNCI16ORFCP (100% identity) | M.Hpy201097ORF7370P | |
| 7375 | elongation factor 4 | |||
| 7795 | AAA family ATPase | |||
| 7800 | M | M.HpyNCI16ORFAP (100% identity) | CCGG | M.Hpy201097ORF7800P |
| ??? | R | Hpy340ORF4985P (94% identity) | CCGG | Hpy201097ORF7800P |
| 7810 | 204 aa hypothetical protein | |||
| 7810 | 204 aa hypothetical protein | |||
| ??? | M | M.Hpy5337ORF3645P (98% identity) | TCGA | M.Hpy201097ORF7815P |
| 7820 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2705 | ATP-dependent DNA helicase RecG | |||
| 2710 | M | M.HpyNCI16ORFWP (100% identity) | M.Hpy201097ORF2710P | |
| 2715 | R | HpyNCI16ORFWP (100% identity) | Hpy201097ORF2710P | |
| 2720 | class I SAM-dependent DNA methyltransferase | |||
| 3345 | biotin synthase | |||
| 3350 | R | HpyNCI16ORFTP (100% identity) | Hpy201097ORF3355P | |
| 3355 | M | M.HpyNCI16ORFTP (100% identity) | M.Hpy201097ORF3355P | |
| 3360 | DNA/RNA non-specific endonuclease | |||
| 3415 | rod shape-determining protein MreC | |||
| 3420 | R | HpyNCI16ORFRP (100% identity) | Hpy201097ORF3425P | |
| 3425 | M | M.HpyNCI16ORFRP (97% identity) | M.Hpy201097ORF3425P | |
| 3430 | response regulator | |||