Helicobacter pylori C-Mx-2010-8 |
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Putative Helicobacter pylori C-Mx-2010-8 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,682,275 bp
GenBank #: CP032027
REBASE acronym: Hpy20108
Org_num: 37782
All begin D2C85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1735 | cagY like domain protein | |||
| 1740 | S | S.HpyNCI40ORFYP (100% identity) | S.Hpy20108ORF1745P | |
| 1745 | M | M.HpyNCI40ORFYP (100% identity) | M.Hpy20108ORF1745P | |
| 1750 | R | HpyNCI40ORFYP (100% identity) | Hpy20108ORF1745P | |
| 1755 | M48 family peptidase | |||
| 4370 | RNA degradosome polyphosphate kinase | |||
| 4380 | S | S.HpyNCI40ORFPP (100% identity) | S.Hpy20108ORF4385P | |
| 4385 | M | M.HpyNCI40ORFPP (100% identity) | M.Hpy20108ORF4385P | |
| 4390 | R | HpyNCI40ORFPP (100% identity) | Hpy20108ORF4385P | |
| 4395 | DUF115 domain-containing protein | |||
| 6225 | outer membrane beta-barrel protein HofF | |||
| 6230 | S | S.HpyNCI40ORFIP (100% identity) | S.Hpy20108ORF6240P | |
| 6235 | CAAX protease | |||
| 6240 | M | M.HpyNCI40ORFIP (100% identity) | M.Hpy20108ORF6240P | |
| 6245 | cadmium-translocating P-type ATPase | |||
| 6520 | hydroxyethylthiazole kinase | |||
| 6525 | R | HpyNCI40ORFGP (100% identity) | Hpy20108ORF6530P | |
| 6530 | M | M.HpyNCI40ORFGP (100% identity) | M.Hpy20108ORF6530P | |
| 6535 | restriction endonuclease subunit M | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 900 | S41 family peptidase | |||
| ??? | R | HpyNCI40IVP (100% identity) | GANTC | Hpy20108ORF915P |
| 915 | M | M.HpyNCI40IV (100% identity) | GANTC | M.Hpy20108ORF915P |
| 920 | DNA methyltransferase | |||
| 915 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyNCI40ORFG1P (100% identity) | Hpy20108ORF920P | |
| 925 | carboxylating nicotinate-nucleotide | |||
| 975 | DNA-binding response regulator | |||
| 980 | R | HpyNCI40IIP (100% identity) | GAAGA | Hpy20108ORF985P |
| 985 | M | M1.HpyNCI40II (100% identity) | GAAGA | M1.Hpy20108ORF985P |
| 990 | M | M2.Hpyfe78ORF7125P (100% identity) | GAAGA | M2.Hpy20108ORF985P |
| 995 | site-specific DNA-methyltransferase | |||
| 1435 | DNA polymerase I | |||
| 1440 | S | S.HpyNCI40XI (100% identity) | S.Hpy20108ORF1445P | |
| 1445 | RM | HpyNCI40XI (100% identity) | Hpy20108ORF1445P | |
| 1450 | ComF family protein | |||
| 1655 | CAAX protease | |||
| 1660 | RM | HpyNCI40ORFZP (100% identity) | Hpy20108ORF1660P | |
| 1665 | DEAD/DEAH box helicase | |||
| 1830 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyNCI40ORFXP (100% identity) | TGCA | M.Hpy20108ORF1840P |
| ??? | R | HpyNCI40ORFXP (100% identity) | TGCA | Hpy20108ORF1840P |
| 1850 | elongation factor Ts | |||
| 2405 | agmatine deiminase | |||
| 2410 | M | M1.HpyNCI40VI (100% identity) | CCTC | M1.Hpy20108ORF2410P |
| 2415 | M | M2.HpyNCI40VIP (100% identity) | CCTC | M2.Hpy20108ORF2410P |
| 2420 | sodium/proline symporter PutP | |||
| 2605 | [acyl-carrier-protein] S-malonyltransferase | |||
| 2615 | R | HpyU302VIIP (100% identity) | GATC | Hpy20108ORF2620P |
| 2620 | M | M.HpyNCI40X (100% identity) | GATC | M.Hpy20108ORF2620P |
| 2625 | alpha-1,2-fucosyltransferase | |||
| 2680 | HNH endonuclease | |||
| 2685 | M | M.HpyPOR114ORF505P (100% identity) | M.Hpy20108ORF2685P | |
| 2690 | HAMP domain-containing protein | |||
| 3045 | elongation factor P | |||
| 3050 | M | M2.HpyIS2ORF860P (26% identity) | M.Hpy20108ORF3050P | |
| 3055 | R | HpyNCI40McrBP (100% identity) | R1.Hpy20108ORF3050P | |
| 3060 | R | HpyNCI40ORFSP (100% identity) | R2.Hpy20108ORF3050P | |
| 3065 | pseudaminic acid synthase | |||
| 3475 | exodeoxyribonuclease VII large subunit | |||
| 3480 | M | M.HpySP301VIII (98% identity) | TCGA | M.Hpy20108ORF3480P |
| 3485 | 69 aa hypothetical protein | |||
| 3485 | 69 aa hypothetical protein | |||
| 3490 | R | HpyU302ORF4735P (100% identity) | Hpy20108ORF3505P | |
| 3495 | 50 aa hypothetical protein | |||
| 3500 | transposase | |||
| ??? | M | M.HpyF017III (99% identity) | CCGG | M.Hpy20108ORF3505P |
| 3510 | AAA family ATPase | |||
| 4465 | outer membrane protein | |||
| ??? | M | M.HpyNCI40ORFMP (97% identity) | M.Hpy20108ORF4470P | |
| 4475 | lipopolysaccharide heptosyltransferase family | |||
| 4480 | translational GTPase TypA | |||
| 4485 | M | M.HpyNY40ORF1087P (100% identity) | ACNGT | M.Hpy20108ORF4485P |
| 4490 | R | HpySP312IIP (100% identity) | ACNGT | Hpy20108ORF4485P |
| 4495 | DNA cytosine methyltransferase | |||
| 4490 | GIY-YIG nuclease family protein | |||
| 4495 | M | M.HpyNCI40ORFOP (100% identity) | ACGT | M.Hpy20108ORF4495P |
| ??? | R | HpyNCI40ORFOP (89% identity) | ACGT | Hpy20108ORF4495P |
| 4505 | catalase | |||
| 4600 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI40ORFLP (99% identity) | GTAC | M.Hpy20108ORF4605P |
| 4610 | R | HpySP309ORF3875P (100% identity) | GTAC | Hpy20108ORF4605P |
| 4615 | M23 family peptidase | |||
| 5440 | (Fe-S)-binding protein | |||
| 5445 | RM | HpyNCI40ORFKP (90% identity) | Hpy20108ORF5445P | |
| 5450 | 142 aa hypothetical protein | |||
| 5550 | 3-5 exonuclease | |||
| 5555 | M | M.HpyPOR114IV (100% identity) | CCNNGG | M.Hpy20108ORF5555P |
| 5560 | R | HpyU420IVP (99% identity) | CCNNGG | Hpy20108ORF5555P |
| 5565 | acetone carboxylase subunit gamma | |||
| 6830 | flagellar hook protein FlgE | |||
| 6835 | R | HpyNCI40VP (100% identity) | GTNNAC | Hpy20108ORF6840P |
| 6840 | M | M.HpyB38ORF894P (98% identity) | GTNNAC | M.Hpy20108ORF6840P |
| 6845 | ATP-dependent helicase | |||
| 7550 | acetyl-CoA carboxylase biotin carboxylase | |||
| 7555 | M | M.HpyNCI40VII (100% identity) | TCNNGA | M.Hpy20108ORF7555P |
| 7560 | R | HpyNCI40VIIP (100% identity) | TCNNGA | Hpy20108ORF7555P |
| 7565 | Laminin subunit alpha-2 precursor | |||
| 7750 | 144 aa hypothetical protein | |||
| 7755 | M | M.HpyOK317ORFDP (100% identity) | GCGC | M.Hpy20108ORF7755P |
| 7760 | flagellar biosynthesis anti-sigma factor FlgM | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 990 | site-specific DNA-methyltransferase | |||
| 995 | M | M.HpyNCI40ORFE1P (99% identity) | M.Hpy20108ORF995P | |
| 1000 | R | HpyNCI40ORFE1P (100% identity) | Hpy20108ORF995P | |
| 1005 | rod shape-determining protein MreC | |||
| 1060 | DNA/RNA non-specific endonuclease | |||
| 1065 | M | M.HpyNCI40ORFC1P (100% identity) | M.Hpy20108ORF1065P | |
| 1070 | R | HpyNCI40ORFC1P (97% identity) | Hpy20108ORF1065P | |
| 1075 | biotin synthase | |||
| 1660 | class I SAM-dependent DNA methyltransferase | |||
| 1665 | R | HpyNCI40ORFA1P (100% identity) | GWCAY | Hpy20108ORF1670P |
| 1670 | M | M.HpyNCI40ORFA1P (100% identity) | GWCAY | M.Hpy20108ORF1670P |
| 1675 | ATP-dependent DNA helicase RecG | |||