Helicobacter pylori C-Mx-2010-12 |
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Putative Helicobacter pylori C-Mx-2010-12 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,658,253 bp
GenBank #: CP032024
REBASE acronym: Hpy201012
Org_num: 37779
All begin D2C87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1030 | type I restriction endonuclease | |||
| 1035 | M | M.HpyNCI14ORFGP (100% identity) | M.Hpy201012ORF1035P | |
| 1040 | S | S.HpyNCI14ORFGP (100% identity) | S.Hpy201012ORF1035P | |
| 1045 | R | HpyNCI14ORFGP (100% identity) | Hpy201012ORF1035P | |
| 1050 | hydroxyethylthiazole kinase | |||
| 1330 | cadmium-translocating P-type ATPase | |||
| 1335 | S | S.HpyNCI14ORFHP (100% identity) | S.Hpy201012ORF1335P | |
| 1340 | restriction endonuclease subunit S | |||
| 3020 | DUF115 domain-containing protein | |||
| 3025 | R | HpyNCI14ORFPP (100% identity) | Hpy201012ORF3030P | |
| 3030 | M | M.HpyNCI14ORFPP (100% identity) | M.Hpy201012ORF3030P | |
| 3035 | S | S.HpyNCI14ORFPP (100% identity) | S.Hpy201012ORF3030P | |
| 3045 | RNA degradosome polyphosphate kinase | |||
| 5680 | M48 family peptidase | |||
| 5685 | R | HpyNCI14ORFXP (96% identity) | Hpy201012ORF5690P | |
| 5690 | M | M.HpyNCI14ORFXP (98% identity) | M.Hpy201012ORF5690P | |
| 5695 | CAAX protease | |||
| 5700 | S | S.HpyNCI14ORFXP (100% identity) | S.Hpy201012ORF5690P | |
| 5705 | cagY like protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 715 | ATP-dependent helicase | |||
| 720 | M | M.HpyME41II (97% identity) | GTNNAC | M.Hpy201012ORF720P |
| 725 | R | HpyNCI14XIIIP (100% identity) | GTNNAC | Hpy201012ORF720P |
| 730 | flagellar hook protein FlgE | |||
| 1850 | acetone carboxylase subunit gamma | |||
| 1855 | R | HpyU420IVP (99% identity) | CCNNGG | Hpy201012ORF1860P |
| 1860 | M | M.HpySP318IV (100% identity) | CCNNGG | M.Hpy201012ORF1860P |
| 1865 | 3-5 exonuclease | |||
| 1965 | helicase | |||
| 1970 | RM | RM2.HpyNCI14ORFJP (100% identity) | Hpy201012ORF1970P | |
| 1975 | (Fe-S)-binding protein | |||
| 2795 | M23 family peptidase | |||
| 2800 | R | HpyNCI14IXP (92% identity) | GTAC | Hpy201012ORF2805P |
| ??? | M | M.HpyNCI14IX (99% identity) | GTAC | M.Hpy201012ORF2805P |
| 2810 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2905 | 81 aa hypothetical protein | |||
| 2910 | R | HpyME41ORF2310P (100% identity) | ACGT | Hpy201012ORF2915P |
| 2915 | M | M.HpyNCI14ORFMP (100% identity) | ACGT | M.Hpy201012ORF2915P |
| 2920 | GIY-YIG nuclease family protein | |||
| 2915 | DNA cytosine methyltransferase | |||
| 2920 | R | HpyNCI14VIP (100% identity) | ACNGT | Hpy201012ORF2925P |
| 2925 | M | M.HpyU004II (100% identity) | ACNGT | M.Hpy201012ORF2925P |
| 2930 | translational GTPase TypA | |||
| 2940 | 264 aa hypothetical protein | |||
| 2945 | M | M.HpyNCI14VII (100% identity) | ATTAAT | M.Hpy201012ORF2945P |
| 2950 | outer membrane beta-barrel protein | |||
| 3640 | 120 aa hypothetical protein | |||
| 3645 | M | M.HpyNCI14XII (100% identity) | CTNAG | M.Hpy201012ORF3645P |
| 3650 | R | HpyNCI14XIIP (96% identity) | CTNAG | Hpy201012ORF3645P |
| 3655 | DUF2334 domain-containing protein | |||
| 3905 | AAA family ATPase | |||
| 3910 | M | M.HpyU416IV (72% identity) | M.Hpy201012ORF3910P | |
| 3915 | transposase | |||
| 3920 | IS607 family transposase | |||
| 3925 | M | M2.HpyNCI14ORFRP (100% identity) | M.Hpy201012ORF3925P | |
| ??? | R | HpyCOL202ORF1515P (92% identity) | Hpy201012ORF3925P | |
| 3935 | 69 aa hypothetical protein | |||
| 3935 | 69 aa hypothetical protein | |||
| 3940 | M | M.HpyNCI14XI (93% identity) | TCGA | M.Hpy201012ORF3940P |
| 3945 | exodeoxyribonuclease VII large subunit | |||
| 4360 | pseudaminic acid synthase | |||
| 4365 | R | R2.HpyPE113ORF865P (100% identity) | R2.Hpy201012ORF4375P | |
| 4370 | R | HpyNCI14McrBP (100% identity) | R1.Hpy201012ORF4375P | |
| 4375 | M | M.HpyU302ORF870P (100% identity) | M.Hpy201012ORF4375P | |
| 4380 | elongation factor P | |||
| 4745 | HAMP domain-containing protein | |||
| ??? | M | M1.HpyNCI14ORFTP (100% identity) | M.Hpy201012ORF4750P | |
| 4755 | HNH endonuclease | |||
| 4805 | alpha-1,2-fucosyltransferase | |||
| 4810 | M | M.HpyNCI14III (100% identity) | GATC | M.Hpy201012ORF4810P |
| 4815 | R | HpyNCI14IIIP (100% identity) | GATC | Hpy201012ORF4810P |
| 4825 | [acyl-carrier-protein] S-malonyltransferase | |||
| 5020 | sodium/proline symporter PutP | |||
| 5025 | M | M2.HpyNCI14ORFVP (100% identity) | CCTC | M2.Hpy201012ORF5025P |
| 5030 | M | M.HpyNCI2aX (100% identity) | CCTC | M1.Hpy201012ORF5025P |
| 5035 | agmatine deiminase | |||
| 5570 | elongation factor Ts | |||
| 5575 | R | HpySP309XIIIP (100% identity) | TGCA | Hpy201012ORF5580P |
| 5580 | M | M.HpyNCI14XIV (100% identity) | TGCA | M.Hpy201012ORF5580P |
| 5585 | 68 aa hypothetical protein | |||
| 5780 | DEAD/DEAH box helicase | |||
| 5785 | RM | HpyNCI14ORFZAP (98% identity) | Hpy201012ORF5785AP | |
| 5790 | transposase | |||
| 5795 | IS607 family transposase | |||
| 5800 | RM | HpyNCI14ORFZBP (98% identity) | Hpy201012ORF5785BP | |
| 5805 | 173 aa hypothetical protein | |||
| 5890 | outer membrane protein | |||
| 5895 | R | HpyNCI14XP (100% identity) | CCATC | Hpy201012ORF5900P |
| ??? | M | M1.HpySP201III (93% identity) | CCATC | M1.Hpy201012ORF5900P |
| ??? | M | M2.HpyNCI14X (79% identity) | CCATC | M2.Hpy201012ORF5900P |
| 5910 | YjgP/YjgQ family permease | |||
| 6035 | ComF family protein | |||
| 6040 | RM | HpyNCI14ORFB1P (100% identity) | Hpy201012ORF6040P | |
| 6045 | S | S.HpyG001ORF7085P (95% identity) | S.Hpy201012ORF6040P | |
| 6050 | DNA polymerase I | |||
| 6485 | site-specific DNA-methyltransferase | |||
| 6490 | M | M1.HpyME41ORF6625P (99% identity) | GAAGA | M1.Hpy201012ORF6490P |
| 6495 | M | M2.HpyNCI14ORFE1P (100% identity) | GAAGA | M2.Hpy201012ORF6490P |
| ??? | R | HpyNCI14ORFE1P (100% identity) | GAAGA | Hpy201012ORF6490P |
| 6510 | DNA-binding response regulator | |||
| 6560 | carboxylating nicotinate-nucleotide | |||
| 6565 | RM | HpyNCI14ORFF1P (100% identity) | Hpy201012ORF6565P | |
| 6570 | site-specific DNA-methyltransferase | |||
| 6565 | DNA methyltransferase | |||
| 6570 | M | M.HpyNCI14IV (100% identity) | GANTC | M.Hpy201012ORF6570P |
| 6575 | R | HpyNCI14IVP (100% identity) | GANTC | Hpy201012ORF6570P |
| 6580 | S41 family peptidase | |||
| 7310 | IceA2 protein | |||
| 7315 | M | M.HpySP318I (100% identity) | CATG | M.Hpy201012ORF7315P |
| 7320 | HAD family hydrolase | |||
| 7500 | purine-nucleoside phosphorylase | |||
| 7505 | R | HpyPO12XIIIP (100% identity) | TCNGA | Hpy201012ORF7510P |
| 7510 | M | M.HpyME41V (100% identity) | TCNGA | M.Hpy201012ORF7510P |
| 7515 | 91 aa hypothetical protein | |||
| 7790 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7795 | M | M.HpyNCI14ORFCP (100% identity) | M.Hpy201012ORF7795P | |
| 7800 | 144 aa hypothetical protein | |||
| 7980 | Laminin subunit alpha-2 precursor | |||
| 7985 | R | HpyNCI14VP (100% identity) | TCNNGA | Hpy201012ORF7990P |
| 7990 | M | M.HpySP606ORF1890P (100% identity) | TCNNGA | M.Hpy201012ORF7990P |
| 7995 | acetyl-CoA carboxylase biotin carboxylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5765 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyNCI14ORFYP (100% identity) | M.Hpy201012ORF5770P | |
| 5780 | R | HpyNCI14ORFYP (100% identity) | Hpy201012ORF5770P | |
| 5785 | class I SAM-dependent DNA methyltransferase | |||
| 6410 | biotin synthase | |||
| 6415 | R | HpyNCI14ORFC1P (95% identity) | Hpy201012ORF6420P | |
| 6420 | M | M.HpyNCI14ORFC1P (100% identity) | M.Hpy201012ORF6420P | |
| 6425 | DNA/RNA non-specific endonuclease | |||
| 6475 | rod shape-determining protein MreC | |||
| 6480 | R | HpyNCI14ORFD1P (100% identity) | Hpy201012ORF6485P | |
| 6485 | M | M.HpyNCI14ORFD1P (100% identity) | M.Hpy201012ORF6485P | |
| 6490 | site-specific DNA-methyltransferase | |||