Helicobacter pylori C-Mx-2010-5 |
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Putative Helicobacter pylori C-Mx-2010-5 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,645,840 bp
GenBank #: CP032022
REBASE acronym: Hpy20105
Org_num: 37781
All begin D2C89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2650 | FAD-dependent thymidylate synthase | |||
| 2655 | S | S.Hpy20103ORF2885P (100% identity) | S.Hpy20105ORF2660P | |
| 2660 | M | M.Hpy20103ORF2885P (100% identity) | M.Hpy20105ORF2660P | |
| 2665 | R | HpyNCI39ORFSP (100% identity) | Hpy20105ORF2660P | |
| 2670 | M48 family peptidase | |||
| 5390 | RNA degradosome polyphosphate kinase | |||
| 5400 | S | S.HpyNCI39ORFKP (100% identity) | S.Hpy20105ORF5405P | |
| 5405 | M | M.HpyNCI39ORFKP (100% identity) | M.Hpy20105ORF5405P | |
| 5410 | R | HpyNCI39ORFKP (100% identity) | Hpy20105ORF5405P | |
| 5415 | DUF115 domain-containing protein | |||
| 7115 | 64 aa hypothetical protein | |||
| 7120 | S | S.HpyNCI39ORFDP (100% identity) | S.Hpy20105ORF7120P | |
| 7125 | cadmium-translocating P-type ATPase | |||
| 7405 | hydroxyethylthiazole kinase | |||
| 7410 | R | HpyNCI39ORFBP (100% identity) | Hpy20105ORF7420P | |
| 7415 | S | S.HpyNCI39ORFBP (100% identity) | S.Hpy20105ORF7420P | |
| 7420 | M | M.HpyNCI39ORFBP (94% identity) | M.Hpy20105ORF7420P | |
| 7425 | type I restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 360 | acetyl-CoA carboxylase biotin carboxylase | |||
| 365 | M | M.HpyNCI39IV (100% identity) | TCNNGA | M.Hpy20105ORF365P |
| 370 | R | HpyNCI39IVP (100% identity) | TCNNGA | Hpy20105ORF365P |
| 375 | Laminin subunit alpha-2 precursor | |||
| 575 | 144 aa hypothetical protein | |||
| 580 | M | M.HpyNCI39ORFC1P (100% identity) | GCGC | M.Hpy20105ORF580P |
| 585 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1075 | HAD family hydrolase | |||
| 1080 | M | M.HpyNCI39I (100% identity) | CATG | M.Hpy20105ORF1080P |
| 1085 | R | HpySP13IP (100% identity) | CATG | R1.Hpy20105ORF1080P |
| 1090 | R | R1.Hpy20103ORF4475P (100% identity) | CATG | R2.Hpy20105ORF1080P |
| 1095 | serine acetyltransferase | |||
| 1820 | S41 family peptidase | |||
| ??? | R | HpyNCI39ORFZP (100% identity) | Hpy20105ORF1835P | |
| 1835 | M | M.HpyNCI39ORFZP (91% identity) | M.Hpy20105ORF1835P | |
| 1840 | DNA methyltransferase | |||
| 1835 | site-specific DNA-methyltransferase | |||
| 1840 | RM | HpyNCI39ORFA1P (100% identity) | Hpy20105ORF1840P | |
| 1845 | carboxylating nicotinate-nucleotide | |||
| 1895 | DNA-binding response regulator | |||
| 1900 | R | HpyNCI39IIP (100% identity) | GAAGA | Hpy20105ORF1905P |
| ??? | M | M2.Hpy20103ORF3640P (100% identity) | GAAGA | M1.Hpy20105ORF1905P |
| 1910 | M | M1.Hpy20103ORF3640P (100% identity) | GAAGA | M2.Hpy20105ORF1905P |
| 1915 | response regulator | |||
| 2355 | DNA polymerase I | |||
| 2360 | S | S.HpyNCI39ORFVP (100% identity) | S.Hpy20105ORF2365P | |
| 2365 | RM | HpyNCI39ORFVP (100% identity) | Hpy20105ORF2365P | |
| 2370 | ComF family protein | |||
| 2580 | 132 aa hypothetical protein | |||
| 2585 | RM | HpyNCI39ORFTP (100% identity) | Hpy20105ORF2585P | |
| 2590 | DEAD/DEAH box helicase | |||
| 2750 | 68 aa hypothetical protein | |||
| 2755 | M | M.HpyNCI39III (100% identity) | TGCA | M.Hpy20105ORF2755P |
| 2760 | R | HpyNCI39IIIP (100% identity) | TGCA | Hpy20105ORF2755P |
| 2765 | elongation factor Ts | |||
| 3285 | site-specific DNA-methyltransferase | |||
| 3290 | M | DNA cytosine methyltransferase | M2.Hpy20105ORF3285BP | |
| 3295 | IS200/IS605 family transposase | |||
| 3300 | transposase | |||
| 3305 | M | DNA cytosine methyltransferase | M2.Hpy20105ORF3285AP | |
| ??? | R | HpyNCI39VIIIP (100% identity) | Hpy20105ORF3285P | |
| 3315 | restriction endonuclease | |||
| 3310 | HNH endonuclease | |||
| 3315 | R | HpySP807VP (100% identity) | Hpy20105ORF3320P | |
| 3320 | M | M.Hpy20103ORF2225P (100% identity) | M.Hpy20105ORF3320P | |
| 3325 | sodium/proline symporter PutP | |||
| 3520 | 328 aa hypothetical protein | |||
| 3525 | M | M.HpyNCI39XIII (100% identity) | GATC | M.Hpy20105ORF3525P |
| 3530 | alpha-1,2-fucosyltransferase | |||
| 4510 | exodeoxyribonuclease VII large subunit | |||
| 4515 | M | M.Hpy20103ORF1025P (100% identity) | TCGA | M.Hpy20105ORF4515P |
| 4520 | 204 aa hypothetical protein | |||
| 4520 | 204 aa hypothetical protein | |||
| ??? | R | Hpy20103ORF1010P (100% identity) | CCGG | Hpy20105ORF4530P |
| 4530 | M | M.HpyNCI39ORFNP (100% identity) | CCGG | M.Hpy20105ORF4530P |
| 4535 | AAA family ATPase | |||
| 4765 | DUF2334 domain-containing protein | |||
| 4770 | R | HpySP305VIIP (100% identity) | CTNAG | Hpy20105ORF4775P |
| 4775 | M | M.HpySP305VII (100% identity) | CTNAG | M.Hpy20105ORF4775P |
| 4780 | 125 aa hypothetical protein | |||
| 5480 | outer membrane beta-barrel protein | |||
| 5485 | M | M.HpyNCI39XII (100% identity) | ATTAAT | M.Hpy20105ORF5485P |
| 5490 | lipopolysaccharide heptosyltransferase family | |||
| 5495 | translational GTPase TypA | |||
| 5500 | M | M.HpyNCI39XI (100% identity) | ACNGT | M.Hpy20105ORF5500P |
| 5505 | R | HpySP312IIP (100% identity) | ACNGT | Hpy20105ORF5500P |
| 5510 | DNA cytosine methyltransferase | |||
| 5505 | GIY-YIG nuclease family protein | |||
| 5510 | M | M.HpyPO01ORF2260P (100% identity) | M.Hpy20105ORF5510P | |
| 5515 | catalase | |||
| 5605 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI39VII (100% identity) | GTAC | M.Hpy20105ORF5610P |
| ??? | R | HpyNCI39VIIP (100% identity) | GTAC | Hpy20105ORF5610P |
| 5620 | M23 family peptidase | |||
| 6495 | (Fe-S)-binding protein | |||
| 6500 | RM | Hpy20103ORF7105P (100% identity) | Hpy20105ORF6500P | |
| 6505 | SIR2 family protein | |||
| 6610 | 3-5 exonuclease | |||
| 6615 | M | M.HpyU004V (100% identity) | CCNNGG | M.Hpy20105ORF6615P |
| 6620 | R | HpyNCI39XP (100% identity) | CCNNGG | Hpy20105ORF6615P |
| 6625 | acetone carboxylase subunit gamma | |||
| 7730 | flagellar hook protein FlgE | |||
| 7735 | R | HpyNCI39VIP (100% identity) | GTNNAC | Hpy20105ORF7740P |
| 7740 | M | M.Hpy20103ORF5870P (100% identity) | GTNNAC | M.Hpy20105ORF7740P |
| 7745 | ATP-dependent helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1915 | response regulator | |||
| 1920 | M | M.HpyNCI39ORFYP (100% identity) | M.Hpy20105ORF1920P | |
| 1925 | R | HpyNCI39ORFYP (100% identity) | Hpy20105ORF1920P | |
| 1930 | rod shape-determining protein MreC | |||
| 1985 | DNA/RNA non-specific endonuclease | |||
| 1990 | M | M.HpyNCI39ORFWP (100% identity) | M.Hpy20105ORF1990P | |
| 1995 | R | HpyNCI39ORFWP (97% identity) | Hpy20105ORF1990P | |
| 2000 | biotin synthase | |||
| 2585 | class I SAM-dependent DNA methyltransferase | |||
| 2590 | R | HpyNCI39ORFUP (100% identity) | Hpy20105ORF2595P | |
| 2595 | M | M.HpyNCI39ORFUP (100% identity) | M.Hpy20105ORF2595P | |
| 2600 | ATP-dependent DNA helicase RecG | |||