Helicobacter pylori C-Mx-2011-69 |
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Putative Helicobacter pylori C-Mx-2011-69 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,683,530 bp
GenBank #: CP032020
REBASE acronym: Hpy1169
Org_num: 37787
All begin D2C90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2255 | M48 family peptidase | |||
| 2260 | R | HpyNCI49ORFWP (100% identity) | Hpy1169ORF2265P | |
| 2265 | M | M.HpyNCI49ORFWP (100% identity) | M.Hpy1169ORF2265P | |
| 2270 | S | S.HpyNCI49ORFWP (100% identity) | S.Hpy1169ORF2265P | |
| 2275 | 303 aa hypothetical protein | |||
| 6115 | cadmium-translocating P-type ATPase | |||
| 6120 | S | S.HpyNCI49ORFGP (100% identity) | S.Hpy1169ORF6120P | |
| 6125 | outer membrane beta-barrel protein HofF | |||
| 7825 | DUF115 domain-containing protein | |||
| 7830 | R | HpyNCI49ORFAP (100% identity) | Hpy1169ORF7835P | |
| 7835 | M | M.HpyNCI49ORFAP (100% identity) | M.Hpy1169ORF7835P | |
| 7840 | S | S.HpyNCI49ORFAP (100% identity) | S.Hpy1169ORF7835P | |
| 7850 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 280 | 125 aa hypothetical protein | |||
| 285 | M | M.HpyNCI49X (100% identity) | CTNAG | M.Hpy1169ORF285P |
| 290 | R | HpyNCI49XP (97% identity) | CTNAG | Hpy1169ORF285P |
| 295 | polysaccharide deacetylase | |||
| 525 | AAA family ATPase | |||
| 530 | M | M.HpyU416IV (100% identity) | CCGG | M.Hpy1169ORF530P |
| ??? | R | HpyPE115IVP (97% identity) | CCGG | Hpy1169ORF530P |
| 540 | 204 aa hypothetical protein | |||
| 540 | 204 aa hypothetical protein | |||
| 545 | M | M.HpyNCI49V (93% identity) | TCGA | M.Hpy1169ORF545P |
| 550 | exodeoxyribonuclease VII large subunit | |||
| 1375 | alpha-1,2-fucosyltransferase | |||
| 1380 | M | M.HpyNCI49ORFA1P (100% identity) | GATC | M.Hpy1169ORF1380P |
| 1385 | R | HpySP315VIIIP (100% identity) | GATC | Hpy1169ORF1380P |
| 1395 | [acyl-carrier-protein] S-malonyltransferase | |||
| 1585 | DNA cytosine methyltransferase | |||
| 1590 | R | HpySP321XIP (99% identity) | GTSAC | Hpy1169ORF1595P |
| 1595 | M | M.HpyNCI49VI (99% identity) | GTSAC | M.Hpy1169ORF1595P |
| 1605 | HNH endonuclease | |||
| 1600 | 60 aa hypothetical protein | |||
| ??? | R | HpyNCI49XIIP (93% identity) | CCTC | Hpy1169ORF1610P |
| 1610 | M | M2.HpyNCI49XIIP (100% identity) | CCTC | M2.Hpy1169ORF1610P |
| 1615 | M | M1.HpyNCI49XII (100% identity) | CCTC | M1.Hpy1169ORF1610P |
| 1620 | agmatine deiminase | |||
| 2165 | cytochrome c1 | |||
| 2170 | R | HpyNCI49IIIP (100% identity) | TGCA | Hpy1169ORF2175P |
| 2175 | M | M.HpyNCI49III (100% identity) | TGCA | M.Hpy1169ORF2175P |
| 2180 | 68 aa hypothetical protein | |||
| 2355 | DNA polymerase I | |||
| 2360 | S | S.Hpy37ORF7585P (91% identity) | S.Hpy1169ORF2365P | |
| 2365 | RM | HpyNCI49ORFVP (100% identity) | Hpy1169ORF2365P | |
| 2370 | ComF family protein | |||
| 2500 | type II methylase | |||
| 2505 | M | M.HpyNCI49ORFTP (94% identity) | M.Hpy1169ORF2505P | |
| 2510 | AlwI family type II restriction endonuclease | |||
| 2505 | DNA cytosine methyltransferase | |||
| 2510 | R | HpyNCI49ORFUP (95% identity) | Hpy1169ORF2510P | |
| 2515 | outer membrane protein | |||
| 2590 | 69 aa hypothetical protein | |||
| 2595 | RM | HpyNCI49ORFRP (100% identity) | Hpy1169ORF2595P | |
| 2600 | 723 aa hypothetical protein | |||
| 3140 | site-specific DNA-methyltransferase | |||
| 3145 | M | M2.HpyU204VIII (100% identity) | GAAGA | M1.Hpy1169ORF3145P |
| 3150 | M | M2.HpyNCI49II (98% identity) | GAAGA | M2.Hpy1169ORF3145P |
| ??? | R | HpyNCI49IIP (100% identity) | GAAGA | Hpy1169ORF3145P |
| 3165 | DNA-binding response regulator | |||
| 3215 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyNCI49ORFLP (99% identity) | Hpy1169ORF3220P | |
| 3230 | site-specific DNA-methyltransferase | |||
| 3225 | DNA methyltransferase | |||
| 3230 | M | M.HpyNCI49IV (100% identity) | GANTC | M.Hpy1169ORF3230P |
| 3235 | R | HpyNCI49IVP (100% identity) | GANTC | Hpy1169ORF3230P |
| 3240 | PDZ domain-containing protein | |||
| 3965 | serine O-acetyltransferase | |||
| ??? | R | HpyNCI49IP (81% identity) | CATG | Hpy1169ORF3975P |
| 3975 | M | M.HpyNCI49I (100% identity) | CATG | M.Hpy1169ORF3975P |
| 3980 | HAD family hydrolase | |||
| 4450 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4455 | M | M.HpyNCI49XIII (100% identity) | GCGC | M.Hpy1169ORF4455P |
| 4460 | 144 aa hypothetical protein | |||
| 5525 | ATP-dependent helicase | |||
| 5530 | M | M.HpyC125VIII (96% identity) | GTNNAC | M.Hpy1169ORF5530P |
| ??? | R | HpyNCI49VIIP (97% identity) | GTNNAC | Hpy1169ORF5530P |
| 5540 | flagellar hook protein FlgE | |||
| 6410 | IS1595 family transposase | |||
| 6415 | M | M2.HpyU203ORF3725P (100% identity) | M1.Hpy1169ORF6415P | |
| 6420 | M | M1.HpyU305ORF3485P (100% identity) | M2.Hpy1169ORF6415P | |
| 6425 | R | HpyNCI49ORFFP (100% identity) | Hpy1169ORF6415P | |
| 6430 | 101 aa hypothetical protein | |||
| 6720 | 487 aa hypothetical protein | |||
| 6725 | RM | HpyNCI49ORFEBP (81% identity) | Hpy1169ORF6725P | |
| 6730 | (Fe-S)-binding protein | |||
| 7620 | M23 family peptidase | |||
| 7625 | R | HpyNCI49VIIIP (95% identity) | GTAC | Hpy1169ORF7630P |
| ??? | M | M.HpyNCI49VIII (99% identity) | GTAC | M.Hpy1169ORF7630P |
| 7635 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 7730 | catalase | |||
| 7735 | M | M.HpySP806ORF2200P (95% identity) | M.Hpy1169ORF7735P | |
| 7740 | translational GTPase TypA | |||
| 7745 | lipopolysaccharide heptosyltransferase family | |||
| 7750 | M | M.HpyNCI49IX (100% identity) | ATTAAT | M.Hpy1169ORF7750P |
| 7755 | outer membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2600 | 723 aa hypothetical protein | |||
| 2605 | R | HpyNCI49ORFSP (100% identity) | Hpy1169ORF2610P | |
| ??? | M | M.HpyNCI49ORFSP (100% identity) | M.Hpy1169ORF2610P | |
| 2620 | ATP-dependent DNA helicase RecG | |||
| 3045 | biotin synthase | |||
| 3050 | R | HpyNCI49ORFPP (96% identity) | Hpy1169ORF3070P | |
| 3055 | 267 aa hypothetical protein | |||
| 3060 | 83 aa hypothetical protein | |||
| 3065 | CAAX protease | |||
| 3070 | M | M.HpyNCI49ORFPP (100% identity) | M.Hpy1169ORF3070P | |
| 3075 | DNA/RNA non-specific endonuclease | |||
| 3130 | rod shape-determining protein MreC | |||
| 3135 | R | HpyNCI49ORFNP (100% identity) | Hpy1169ORF3140P | |
| 3140 | M | M.HpyNCI49ORFNP (100% identity) | M.Hpy1169ORF3140P | |
| 3145 | site-specific DNA-methyltransferase | |||