Mannheimia haemolytica 1560 |
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Putative Mannheimia haemolytica 1560 RM systems
Ref: Clawson,M.L. et al. unpublished
REBASE ref # 29745
Complete sequence: 2,661,933 bp
GenBank #: CP017529
REBASE acronym: Mha1560
Org_num: 37886
All begin BG600_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3165 | methionine synthase | |||
| 3170 | M | M.Pba12565ORF10250P (100% identity) | CAACNNNNGT | M.Mha1560III |
| 3175 | type III restriction endonuclease subunit M | |||
| 3180 | S | S2.Mhas184ORF2820P (100% identity) | S2.Mha1560III | |
| 3185 | 211 aa hypothetical protein | |||
| 3170 | type I restriction endonuclease subunit M | |||
| 3175 | S | S.Pba12565ORF10250P (100% identity) | CAACNNNNNTC | S1.Mha1560ORF3170P |
| 3180 | restriction endonuclease subunit S | |||
| 8500 | bifunctional glutamine synthetase | |||
| 8505 | R | Mhas183ORF4955P (100% identity) | GACNNNNNTTC | Mha1560IIP |
| 8510 | S | S.PhaAI (100% identity) | GACNNNNNTTC | S.Mha1560II |
| 8515 | M | M.Mha1532ORF5880P (100% identity) | GACNNNNNTTC | M.Mha1560II |
| 8520 | 125 aa hypothetical protein | |||
| 11640 | phosphatidylserine decarboxylase | |||
| 11645 | R | Pba12565ORF1955P (100% identity) | GNGAYNNNNNNNNTGT | Mha1560IP |
| 11650 | M | M.Pba12565ORF1955P (100% identity) | GNGAYNNNNNNNNTGT | M.Mha1560I |
| 11655 | transcriptional regulator | |||
| 11660 | S | S2.MhaPORFGP (100% identity) | GNGAYNNNNNNNNTGT | S1.Mha1560IP |
| 11665 | integrase | |||
| 11665 | integrase | |||
| 11670 | S | S1.MhaGHORF4030P (100% identity) | GNGAYNNNNNNNRTTG | S2.Mha1560ORF11650P |
| 11675 | bifunctional glutamate--cysteine | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1315 | helicase IV | |||
| 1320 | RM | Mhas183ORF12540P (100% identity) | CTGAAG | Mha1560IV |
| 1325 | M | M.Pba12565ORF12115P (100% identity) | CTGAAG | M.Mha1560IV |
| 1330 | IS481 family transposase | |||
| 3040 | 63 aa hypothetical protein | |||
| 3045 | M | M.Pba12565ORF10370P (100% identity) | M.Mha1560ORF3045P | |
| 3050 | IS481 family transposase | |||
| 4695 | 79 aa hypothetical protein | |||
| 4700 | M | M.Pba12565ORF8745P (100% identity) | GCATC | M.Mha1560V |
| 4705 | R | Pba12565ORF8745P (100% identity) | GCATC | Mha1560VP |
| 4710 | protein-transmembrane prediction | |||
| 6290 | 85 aa hypothetical protein | |||
| 6295 | M | M.Mhas183ORF7435P (100% identity) | M.Mha1560ORF6295P | |
| 6300 | 154 aa hypothetical protein | |||
| 6415 | DNA helicase | |||
| 6420 | M | M.Pba12565ORF7080P (100% identity) | M.Mha1560ORF6420P | |
| 6425 | 168 aa hypothetical protein | |||
| 7930 | 168 aa hypothetical protein | |||
| 7935 | M | M.Mha0746ORF11685P (100% identity) | M.Mha1560ORF7935P | |
| 7940 | DNA helicase | |||
| 8100 | IS481 family transposase | |||
| 8105 | M | M.Pba12565ORF4290P (100% identity) | M.Mha1560ORF8105P | |
| 8110 | 348 aa hypothetical protein | |||
| 8975 | 342 aa hypothetical protein | |||
| 8980 | M | M.Pba12565ORF4970P (99% identity) | M.Mha1560ORF8980P | |
| 8985 | replication protein | |||
| 9105 | 69 aa hypothetical protein | |||
| 9110 | M | M.Pba12565ORF6605P (100% identity) | M1.Mha1560ORF9110P | |
| 9115 | M | M.Pba12565ORF6600P (100% identity) | M2.Mha1560ORF9110P | |
| 9120 | 91 aa hypothetical protein | |||
| 9980 | sodium-dependent transporter | |||
| 9985 | M | M.Pba12565ORF3610P (100% identity) | GATC | M.Mha1560ORF9985P |
| 9990 | 3-dehydroquinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7010 | citrate (Si)-synthase | |||
| ??? | R | Pba12565ORF5515P (100% identity) | Mha1560ORF7025P | |
| ??? | M | M.MhaPORFJP (100% identity) | M.Mha1560ORF7025P | |
| 7035 | DNA methylase N-4/N-6 | |||
| 8735 | methyltransferase | |||
| 8740 | M | M.Pba12565ORF6755P (100% identity) | GTTAAT | M.Mha1560ORF8740P |
| 8745 | R | Pba12565ORF6755P (100% identity) | GTTAAT | Mha1560ORF8740P |
| 8750 | DNA gyrase subunit B | |||