Shewanella decolorationis Ni1-3 |
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Putative Shewanella decolorationis Ni1-3 RM systems
Ref: Cai,X. et al. Ecotoxicol. Environ. Saf. 181, 472-480 (2019)
REBASE ref # 29213
| Sequence length: | GenBank #: | |
| Chromosome: | 5,001,960 bp | CP031775 |
| plasmid pNi1-3: | 286,397 bp | CP076856 |
REBASE acronym: SdeNi13
Org_num: 37489
All begin D0436_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20315 | AAA family ATPase | |||
| 23580 | S | S.SspAGA9ORFBP (49% identity) | S.SdeNi13ORF20305P | |
| 20305 | M | M.EsaSS345ORFBP (97% identity) | M.SdeNi13ORF20305P | |
| 20300 | R | SdeS12ORF1283P (99% identity) | SdeNi13ORF20305P | |
| 20295 | tyrosine-type recombinase/integrase | |||
| 12290 | helix-turn-helix transcriptional regulator | |||
| 12285 | M | M.SpuJNE2ORF9100P (97% identity) | M.SdeNi13ORF12285P | |
| 12280 | S | S.VtuFP17ORF1370P (50% identity) | S.SdeNi13ORF12285P | |
| 12275 | 233 aa hypothetical protein | |||
| 12270 | 217 aa hypothetical protein | |||
| 12265 | R | EsaSS207ORFAP (98% identity) | SdeNi13ORF12285P | |
| 12260 | 137 aa hypothetical protein | |||
| 10440 | WYL domain-containing protein | |||
| 10445 | M | M.SspMR7ORF1782P (94% identity) | M.SdeNi13ORF10445P | |
| 10450 | S | S.AplApp6ORF84P (64% identity) | S.SdeNi13ORF10445P | |
| 10455 | DUF4268 domain-containing protein | |||
| 10460 | DUF262 domain-containing protein | |||
| 10465 | DUF262 domain-containing protein | |||
| 10470 | R | SpuSA70ORF19675P (98% identity) | SdeNi13ORF10445P | |
| 23790 | IS5-like element ISSpu16 family transposase | |||
| 3955 | restriction endonuclease | |||
| 3950 | R | VchVCC19ORFDP (99% identity) | SdeNi13ORF3935P | |
| 3945 | Fic family protein | |||
| 3940 | S | S.Vsp43133ORF5185P (95% identity) | S.SdeNi13ORF3935P | |
| 3935 | M | M.Csp696ORF21720P (97% identity) | M.SdeNi13ORF3935P | |
| 3930 | WYL domain-containing protein | |||
| 21770 | nucleotidyl transferase AbiEii/AbiGii toxin | |||
| 21775 | M | M.Sxi6452ORF22745P (100% identity) | M.SdeNi13ORF21775P | |
| 21780 | S | S.SdeS12ORF3089P (66% identity) | S.SdeNi13ORF21775P | |
| 21785 | R | Vfl0110ORFBP (95% identity) | SdeNi13ORF21775P | |
| 21790 | Fic family protein | |||
| 475 | restriction endonuclease subunit S | |||
| 470 | M | M.Spu10738I (97% identity) | M.SdeNi13ORF470P | |
| 465 | S | S.Vfl1197ORFCP (60% identity) | S.SdeNi13ORF470P | |
| 460 | DUF2188 domain-containing protein | |||
| 455 | nucleotidyltransferase | |||
| 450 | SLATT domain-containing protein | |||
| 440 | NAD(P)-dependent oxidoreductase | |||
| 435 | glycosyltransferase | |||
| 430 | radical SAM protein | |||
| 425 | methyltransferase domain-containing protein | |||
| 420 | histidine phosphatase family protein | |||
| 415 | R | Vfu241904ORFCP (96% identity) | SdeNi13ORF470P | |
| 410 | M48 family metallopeptidase | |||
| plasmid pNi1-3 | ||||
| 24635 | nucleotidyl transferase AbiEii/AbiGii toxin | |||
| 24640 | M | M.Sxi6452ORF22745P (100% identity) | M.SdeNi13ORF21775P | |
| 24645 | S | S.SdeS12ORF3089P (66% identity) | S.SdeNi13ORF21775P | |
| 24650 | R | Vfl0110ORFBP (95% identity) | SdeNi13ORF21775P | |
| 24655 | 136 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1605 | ATP-binding protein | |||
| 1610 | M | M.SspANAORF3891P (99% identity) | GATC | M.SdeNi13DamP |
| 1615 | DUF2970 domain-containing protein | |||
| 1605 | AAA family ATPase | |||
| ??? | M | M.SdeNi13DamP (99% identity) | GATC | M.SdeNi13Dam2P |
| 1615 | DUF2970 domain-containing protein | |||
| 10960 | excinuclease ABC subunit UvrB | |||
| 10965 | M | M.SxiVS1ORF12220P (99% identity) | M.SdeNi13ORF10965P | |
| 10970 | 73 aa hypothetical protein | |||
| 22045 | 142 aa hypothetical protein | |||
| 22050 | M | M.SspLC6ORF23255P (99% identity) | M.SdeNi13ORF22050P | |
| 22055 | 95 aa hypothetical protein | |||
| plasmid pNi1-3 | ||||
| ??? | M | M.SspLC6ORF23255P (99% identity) | M.SdeNi13ORF22050P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3960 | TraI domain-containing protein | |||
| 3955 | R | Vsp1107MrrP (100% identity) | SdeNi13MrrP | |
| 3950 | type I restriction endonuclease subunit R | |||