Helicobacter pylori B128 |
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Putative Helicobacter pylori B128 RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,675,360 bp
GenBank #: CP024951
REBASE acronym: HpyB128K
Org_num: 37464
All begin CV725_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | formyltetrahydrofolate deformylase | |||
| 495 | S | S.HpyR3cORF510P (100% identity) | S.HpyB128KORF495P | |
| 500 | nickel transporter | |||
| 4425 | RNA degradosome polyphosphate kinase | |||
| ??? | S | S.Hpy713KORF5375P (100% identity) | S.HpyB128KORF4440P | |
| 4440 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB128KORF4440P | |
| 4445 | R | HpyR3cORF5365P (100% identity) | HpyB128KORF4440P | |
| 4450 | DUF115 domain-containing protein | |||
| 4730 | type I restriction endonuclease | |||
| 4735 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB128KORF4735P | |
| 4740 | S | S.HpyR3cORF5080P (100% identity) | S.HpyB128KORF4735P | |
| 4745 | R | HpyR3cORF5080P (100% identity) | HpyB128KORF4735P | |
| 4750 | hydroxyethylthiazole kinase | |||
| 5025 | cadmium-translocating P-type ATPase | |||
| 5030 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB128KORF5030P | |
| 5035 | outer membrane beta-barrel protein HofF | |||
| 8180 | M48 family peptidase | |||
| 8185 | R | HpyR3cORF8160P (100% identity) | HpyB128KORF8190P | |
| 8190 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB128KORF8190P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyB128KORF8190P | |
| 8205 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | HpyB128KORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB128KORF140P |
| ??? | M | M1.HpyR3cORF145P (93% identity) | CCATC | M1.HpyB128KORF140P |
| ??? | M | M2.HpyR3cORF145P (77% identity) | CCATC | M2.HpyB128KORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyR3cORF285P (100% identity) | HpyB128KORF280P | |
| 285 | S | S.HpyR3cORF285P (51% identity) | S1.HpyB128KORF280P | |
| 290 | S | S2.HpyB1283ORF280P (100% identity) | S2.HpyB128KORF280P | |
| 295 | DNA polymerase I | |||
| 565 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | Hpy128713ORF570P (100% identity) | HpyB128KORF570P | |
| 580 | type II restriction endonuclease | |||
| 575 | 138 aa hypothetical protein | |||
| 580 | R | HpyB8ORF127P (40% identity) | HpyB128KORF580P | |
| 585 | S41 family peptidase | |||
| 1305 | serine acetyltransferase | |||
| ??? | R | HpyB8ORF281P (100% identity) | CATG | HpyB128KORF1320P |
| 1320 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB128KORF1320P |
| 1325 | HAD family hydrolase | |||
| 1500 | purine-nucleoside phosphorylase | |||
| 1505 | R | HpyU408XP (100% identity) | TCNGA | HpyB128KORF1510P |
| 1510 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB128KORF1510P |
| 1515 | 640 aa hypothetical protein | |||
| 1800 | flagellar biosynthesis protein FlgM | |||
| 1805 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB128KORF1805P |
| 1810 | 144 aa hypothetical protein | |||
| 1995 | Laminin subunit alpha-2 precursor | |||
| 2000 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB128KORF2005P |
| 2005 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB128KORF2005P |
| 2010 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2455 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | Hpy166ORF5280P (94% identity) | HpyB128KORF2460P | |
| 2470 | agmatine deiminase | |||
| 2465 | DNA methyltransferase | |||
| ??? | M | M.HpyB1281ORFAP (100% identity) | M.HpyB128KORFAP | |
| 2475 | site-specific DNA-methyltransferase | |||
| 2470 | agmatine deiminase | |||
| 2475 | M | M1.HpyR3cORF7300P (100% identity) | CCTC | M1.HpyB128KORF2475P |
| 2480 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyB128KORF2475P |
| ??? | R | Hpy713KORF7330P (100% identity) | CCTC | HpyB128KORF2475P |
| 2490 | restriction endonuclease | |||
| 2485 | restriction endonuclease | |||
| 2490 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyB128KORF2490P |
| 2495 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB128KORF2490P |
| 2500 | DNA cytosine methyltransferase | |||
| 2705 | 356 aa hypothetical protein | |||
| 2710 | M | M.HpyR3cORF7075P (90% identity) | GATC | M.HpyB128KORF2710P |
| 2715 | alpha-1,2-fucosyltransferase | |||
| 3560 | exodeoxyribonuclease VII large subunit | |||
| 3565 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyB128KORF3565P |
| 3570 | 198 aa hypothetical protein | |||
| 3570 | 198 aa hypothetical protein | |||
| 3575 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyB128KORF3580P |
| 3580 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB128KORF3580P |
| 3585 | ATP-dependent chaperone ClpB | |||
| 4515 | outer membrane beta-barrel protein | |||
| 4520 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyB128KORF4520P |
| 4525 | lipopolysaccharide heptosyltransferase family | |||
| 4530 | translational GTPase TypA | |||
| ??? | M | M.HpyR3cORF5270P (99% identity) | ACNGT | M.HpyB128KORF4535P |
| 4545 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyB128KORF4535P |
| 4550 | DNA (cytosine-5-)-methyltransferase | |||
| 4545 | restriction endonuclease | |||
| 4550 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB128KORF4550P |
| ??? | R | Hpy713KORF5270P (100% identity) | ACGT | HpyB128KORF4550P |
| 4560 | 82 aa hypothetical protein | |||
| 4715 | phosphatase PAP2 family protein | |||
| 4720 | R | HpyR3cORF5085P (100% identity) | HpyB128KORF4725P | |
| 4725 | M | M.HpyR3cORF5085P (100% identity) | M.HpyB128KORF4725P | |
| 4730 | type I restriction endonuclease | |||
| 5625 | 0 aa hypothetical protein | |||
| 5630 | RM | HpyR3cORF4175P (100% identity) | HpyB128KORF5630P | |
| 5635 | (Fe-S)-binding protein | |||
| 6490 | M23 family peptidase | |||
| 6495 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB128KORF6500P |
| ??? | M | M.Hpy713KORF3315P (100% identity) | GTAC | M.HpyB128KORF6500P |
| 6505 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 6720 | flagellar hook protein FlgE | |||
| 6725 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB128KORF6730P |
| 6730 | M | M.HpyB1283ORF3080P (100% identity) | GTNNAC | M.HpyB128KORF6730P |
| 6735 | ATP-dependent helicase | |||
| 7555 | glycosyltransferase family 8 protein | |||
| 7560 | M | M.HpyR3cORF7520P (100% identity) | M.HpyB128KORF7560P | |
| 7565 | site-specific DNA-methyltransferase | |||
| 8095 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB128KORF8105P |
| 8105 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB128KORF8105P |
| 8110 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyB128ORF79P (100% identity) | M.HpyB128KORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | HpyB128KORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 2325 | biotin synthase | |||
| 2330 | R | HpyR3cORF7440P (100% identity) | HpyB128KORF2335P | |
| 2335 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB128KORF2335P | |
| 2340 | DNA/RNA non-specific endonuclease | |||
| 2390 | rod shape-determining protein MreC | |||
| 2395 | R | HpyR3cORF7375P (100% identity) | HpyB128KORF2400P | |
| 2400 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB128KORF2400P | |
| 2405 | DNA-binding response regulator | |||