Helicobacter pylori 7.13 |
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Putative Helicobacter pylori 7.13 RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,676,743 bp
GenBank #: CP024953
REBASE acronym: Hpy713K
Org_num: 37468
All begin CV723_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | formyltetrahydrofolate deformylase | |||
| 495 | S | S.HpyR3cORF510P (100% identity) | S.Hpy713KORF495P | |
| 500 | nickel transporter | |||
| 4785 | outer membrane beta-barrel protein HofF | |||
| 4790 | S | S.HpyR3cORF4785P (100% identity) | S.Hpy713KORF4790P | |
| 4795 | cadmium-translocating P-type ATPase | |||
| 5070 | hydroxyethylthiazole kinase | |||
| 5075 | R | HpyR3cORF5080P (100% identity) | Hpy713KORF5085P | |
| 5080 | S | S.HpyR3cORF5080P (100% identity) | S.Hpy713KORF5085P | |
| 5085 | M | M.HpyR3cORF5080P (100% identity) | M.Hpy713KORF5085P | |
| 5090 | type I restriction endonuclease | |||
| 5365 | DUF115 domain-containing protein | |||
| 5370 | R | HpyR3cORF5365P (100% identity) | Hpy713KORF5375P | |
| 5375 | M | M.HpyR3cORF5365P (100% identity) | M.Hpy713KORF5375P | |
| ??? | S | S.HpyB128KORF4440P (100% identity) | S.Hpy713KORF5375P | |
| 5390 | RNA degradosome polyphosphate kinase | |||
| 8170 | M48 family peptidase | |||
| 8175 | R | HpyR3cORF8160P (100% identity) | Hpy713KORF8180P | |
| 8180 | M | M.HpyR3cORF8160P (100% identity) | M.Hpy713KORF8180P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.Hpy713KORF8180P | |
| 8195 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | Hpy713KORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | Hpy713KORF140P |
| ??? | M | M1.HpyR3cORF145P (93% identity) | CCATC | M1.Hpy713KORF140P |
| ??? | M | M2.HpyR3cORF145P (77% identity) | CCATC | M2.Hpy713KORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyR3cORF285P (100% identity) | Hpy713KORF280P | |
| 285 | S | S.HpyR3cORF285P (51% identity) | S1.Hpy713KORF280P | |
| 290 | S | S2.HpyB128KORF280P (100% identity) | S2.Hpy713KORF280P | |
| 295 | DNA polymerase I | |||
| 565 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpyB1281ORF590P (100% identity) | Hpy713KORF570P | |
| 585 | S41 family peptidase | |||
| 1300 | serine acetyltransferase | |||
| ??? | R | HpyB8ORF281P (100% identity) | CATG | Hpy713KORF1315P |
| 1315 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.Hpy713KORF1315P |
| 1320 | HAD family hydrolase | |||
| 1495 | purine-nucleoside phosphorylase | |||
| 1500 | R | HpyU408XP (100% identity) | TCNGA | Hpy713KORF1505P |
| 1505 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.Hpy713KORF1505P |
| 1510 | outer membrane protein | |||
| 1795 | flagellar biosynthesis protein FlgM | |||
| 1800 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.Hpy713KORF1800P |
| 1805 | 144 aa hypothetical protein | |||
| 1995 | Laminin subunit alpha-2 precursor | |||
| 2000 | R | HpyR3cORF1995P (100% identity) | TCNNGA | Hpy713KORF2005P |
| 2005 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.Hpy713KORF2005P |
| 2010 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3080 | ATP-dependent helicase | |||
| 3085 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.Hpy713KORF3085P |
| 3090 | R | HpyU437IXP (100% identity) | GTNNAC | Hpy713KORF3085P |
| 3095 | flagellar hook protein FlgE | |||
| 3310 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyB128KORF6500P (100% identity) | GTAC | M.Hpy713KORF3315P |
| 3320 | R | HpyR3cORF3315P (100% identity) | GTAC | Hpy713KORF3315P |
| 3325 | M23 family peptidase | |||
| 4180 | (Fe-S)-binding protein | |||
| 4185 | RM | HpyR3cORF4175P (100% identity) | Hpy713KORF4185P | |
| 4190 | 0 aa hypothetical protein | |||
| 5090 | type I restriction endonuclease | |||
| 5095 | M | M.HpyR3cORF5085P (100% identity) | M.Hpy713KORF5095P | |
| 5100 | R | HpyR3cORF5085P (100% identity) | Hpy713KORF5095P | |
| 5105 | phosphatase PAP2 family protein | |||
| 5260 | 82 aa hypothetical protein | |||
| ??? | R | HpyB128KORF4550P (100% identity) | ACGT | Hpy713KORF5270P |
| 5270 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.Hpy713KORF5270P |
| 5275 | restriction endonuclease | |||
| 5270 | DNA (cytosine-5-)-methyltransferase | |||
| 5275 | R | HpyR3cORF5270P (100% identity) | ACNGT | Hpy713KORF5280P |
| 5280 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.Hpy713KORF5280P |
| 5285 | translational GTPase TypA | |||
| 5290 | lipopolysaccharide heptosyltransferase family | |||
| 5295 | M | M.HpyU423II (100% identity) | ATTAAT | M.Hpy713KORF5295P |
| 5300 | outer membrane beta-barrel protein | |||
| 6230 | ATP-dependent chaperone ClpB | |||
| 6235 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.Hpy713KORF6235P |
| ??? | R | Hpy128713ORF6220P (100% identity) | CCGG | Hpy713KORF6235P |
| 6245 | 198 aa hypothetical protein | |||
| 6245 | 198 aa hypothetical protein | |||
| 6250 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.Hpy713KORF6250P |
| 6255 | exodeoxyribonuclease VII large subunit | |||
| 7090 | alpha-1,2-fucosyltransferase | |||
| 7095 | M | M.HpyR3cORF7075P (90% identity) | GATC | M.Hpy713KORF7095P |
| 7100 | 356 aa hypothetical protein | |||
| 7310 | DNA cytosine methyltransferase | |||
| 7315 | R | HpyR3cORF7290P (100% identity) | GTSAC | Hpy713KORF7320P |
| 7320 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.Hpy713KORF7320P |
| 7325 | restriction endonuclease | |||
| 7320 | restriction endonuclease | |||
| ??? | R | restriction endonuclease | CCTC | Hpy713KORF7330P |
| 7330 | DNA (cytosine-5-)-methyltransferase | |||
| 7335 | M | site-specific DNA-methyltransferase | CCTC | M2.Hpy713KORF7330P |
| 7340 | agmatine deiminase | |||
| 7340 | agmatine deiminase | |||
| 7345 | RM | HpyR3cORF7315P (100% identity) | Hpy713KORF7345P | |
| 7350 | nicotinate-nucleotide diphosphorylase | |||
| 7540 | glycosyltransferase family 8 protein | |||
| 7545 | M | M.HpyB8ORF1574P (100% identity) | M.Hpy713KORF7545P | |
| 7550 | site-specific DNA-methyltransferase | |||
| 8085 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | Hpy713KORF8095P |
| 8095 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.Hpy713KORF8095P |
| 8100 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyR3cORF45P (100% identity) | M.Hpy713KORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | Hpy713KORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 7400 | DNA-binding response regulator | |||
| 7405 | M | M.HpyR3cORF7375P (100% identity) | M.Hpy713KORF7405P | |
| 7410 | R | HpyR3cORF7375P (100% identity) | Hpy713KORF7405P | |
| 7415 | rod shape-determining protein MreC | |||
| 7465 | DNA/RNA non-specific endonuclease | |||
| 7470 | M | M.HpyR3cORF7440P (100% identity) | M.Hpy713KORF7470P | |
| 7475 | R | HpyR3cORF7440P (100% identity) | Hpy713KORF7470P | |
| 7480 | biotin synthase | |||