Helicobacter pylori B128 7.13 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori B128 7.13 RM systems
Ref: Dawson,E.M. et al. Helicobacter 24 (4), e12587 (2019)
REBASE ref # 29544
Complete sequence: 1,675,441 bp
GenBank #: CP042211
REBASE acronym: Hpy128713
Org_num: 37405
All begin D5R83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | formyltetrahydrofolate deformylase | |||
| 495 | S | S.HpyR3cORF510P (100% identity) | S.Hpy128713ORF495P | |
| 500 | nickel-binding protein HpnL | |||
| 4760 | outer membrane beta-barrel protein HofF | |||
| 4765 | S | S.HpyR3cORF4785P (100% identity) | S.Hpy128713ORF4765P | |
| 4770 | cadmium-translocating P-type ATPase | |||
| 5045 | hydroxyethylthiazole kinase | |||
| 5050 | R | HpyR3cORF5080P (100% identity) | Hpy128713ORF5060P | |
| 5055 | S | S.HpyR3cORF5080P (100% identity) | S.Hpy128713ORF5060P | |
| 5060 | M | M.HpyR3cORF5080P (100% identity) | M.Hpy128713ORF5060P | |
| 5065 | type I restriction endonuclease | |||
| 5340 | motility associated factor glycosyltransferase | |||
| 5345 | R | HpyR3cORF5365P (100% identity) | Hpy128713ORF5350P | |
| 5350 | M | M.HpyR3cORF5365P (100% identity) | M.Hpy128713ORF5350P | |
| 5355 | S | S.HpyB1281ORF5365P (100% identity) | S.Hpy128713ORF5350P | |
| 5365 | RNA degradosome polyphosphate kinase | |||
| 8155 | M48 family metallopeptidase | |||
| 8160 | R | HpyR3cORF8160P (100% identity) | Hpy128713ORF8165P | |
| 8165 | M | M.HpyR3cORF8160P (100% identity) | M.Hpy128713ORF8165P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.Hpy128713ORF8165P | |
| 8180 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | Hpy128713ORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | Hpy128713ORF140P |
| 140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M1.Hpy128713ORF140P |
| 145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M2.Hpy128713ORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyR3cORF285P (100% identity) | Hpy128713ORF280P | |
| 285 | S | S.HpyR3cORF285P (51% identity) | S1.Hpy128713ORF280P | |
| 290 | S | S2.HpyB128KORF280P (100% identity) | S2.Hpy128713ORF280P | |
| 295 | DNA polymerase I | |||
| 565 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyB128KORF570P (100% identity) | Hpy128713ORF570P | |
| 580 | type II restriction endonuclease | |||
| 575 | 138 aa hypothetical protein | |||
| 580 | R | HpyB8ORF127P (40% identity) | Hpy128713ORF580P | |
| 585 | S41 family peptidase | |||
| 1295 | serine O-acetyltransferase | |||
| ??? | R | HpyB8ORF281P (100% identity) | CATG | Hpy128713ORF1310P |
| 1310 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.Hpy128713ORF1310P |
| 1315 | HAD family hydrolase | |||
| 1490 | purine-nucleoside phosphorylase | |||
| 1495 | R | HpyU408XP (100% identity) | TCNGA | Hpy128713ORF1500P |
| 1500 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.Hpy128713ORF1500P |
| 1505 | outer membrane protein | |||
| 1790 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1795 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.Hpy128713ORF1795P |
| 1800 | 144 aa hypothetical protein | |||
| 1990 | Laminin subunit alpha-2 precursor | |||
| 1995 | R | HpyR3cORF1995P (100% identity) | TCNNGA | Hpy128713ORF2000P |
| 2000 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.Hpy128713ORF2000P |
| 2005 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3075 | ATP-dependent helicase | |||
| 3080 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.Hpy128713ORF3080P |
| 3085 | R | HpyU437IXP (100% identity) | GTNNAC | Hpy128713ORF3080P |
| 3090 | flagellar hook protein FlgE | |||
| 3305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyB128KORF6500P (100% identity) | GTAC | M.Hpy128713ORF3310P |
| 3315 | R | HpyR3cORF3315P (100% identity) | GTAC | Hpy128713ORF3310P |
| 3320 | M23 family metallopeptidase | |||
| 4160 | (Fe-S)-binding protein | |||
| 4165 | RM | HpyR3cORF4175P (100% identity) | Hpy128713ORF4165P | |
| 4170 | SIR2 family protein | |||
| 5065 | type I restriction endonuclease | |||
| 5070 | M | M.HpyR3cORF5085P (100% identity) | M.Hpy128713ORF5070P | |
| 5075 | R | HpyR3cORF5085P (100% identity) | Hpy128713ORF5070P | |
| 5080 | phosphatase PAP2 family protein | |||
| 5235 | 82 aa hypothetical protein | |||
| ??? | R | HpyB128KORF4550P (100% identity) | ACGT | Hpy128713ORF5245P |
| 5245 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.Hpy128713ORF5245P |
| 5250 | GIY-YIG nuclease family protein | |||
| 5245 | DNA cytosine methyltransferase | |||
| 5250 | R | HpyR3cORF5270P (100% identity) | ACNGT | Hpy128713ORF5255P |
| 5255 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.Hpy128713ORF5255P |
| 5260 | translational GTPase TypA | |||
| 5265 | glycosyltransferase family 9 protein | |||
| 5270 | M | M.HpyU423II (100% identity) | ATTAAT | M.Hpy128713ORF5270P |
| 5275 | outer membrane beta-barrel protein | |||
| 6215 | AAA family ATPase | |||
| 6220 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.Hpy128713ORF6220P |
| ??? | R | Hpy713KORF6235P (100% identity) | CCGG | Hpy128713ORF6220P |
| 6230 | 198 aa hypothetical protein | |||
| 6230 | 198 aa hypothetical protein | |||
| 6235 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.Hpy128713ORF6235P |
| 6240 | exodeoxyribonuclease VII large subunit | |||
| 7070 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 7075 | M | M.HpyR3cORF7075P (90% identity) | M.Hpy128713ORF7075P | |
| 7080 | 356 aa hypothetical protein | |||
| 7290 | DNA cytosine methyltransferase | |||
| 7295 | R | HpyR3cORF7290P (100% identity) | GTSAC | Hpy128713ORF7300P |
| 7300 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.Hpy128713ORF7300P |
| 7305 | HNH endonuclease | |||
| 7300 | site-specific DNA-methyltransferase | |||
| ??? | R | HpyB128KORF2475P (100% identity) | CCTC | Hpy128713ORF7310P |
| 7310 | DNA cytosine methyltransferase | |||
| 7315 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.Hpy128713ORF7310P |
| 7320 | agmatine deiminase | |||
| 7315 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyB128KORFAP (100% identity) | M.Hpy128713ORFAP | |
| 7325 | N-6 DNA methylase | |||
| 7320 | agmatine deiminase | |||
| ??? | RM | HpyR3cORF7315P (99% identity) | Hpy128713ORF7325P | |
| 7330 | carboxylating nicotinate-nucleotide | |||
| 7520 | glycosyltransferase family 8 protein | |||
| 7525 | M | M.HpyR3cORF7520P (100% identity) | M.Hpy128713ORF7525P | |
| 7530 | site-specific DNA-methyltransferase | |||
| 8070 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | Hpy128713ORF8080P |
| 8080 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.Hpy128713ORF8080P |
| 8085 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyR3cORF45P (100% identity) | M.Hpy128713ORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | Hpy128713ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 7380 | copper response regulator transcription factor | |||
| 7385 | M | M.HpyR3cORF7375P (100% identity) | M.Hpy128713ORF7385P | |
| 7390 | R | HpyR3cORF7375P (100% identity) | Hpy128713ORF7385P | |
| 7395 | rod shape-determining protein MreC | |||
| 7445 | DNA/RNA non-specific endonuclease | |||
| 7450 | M | M.HpyR3cORF7440P (100% identity) | M.Hpy128713ORF7450P | |
| 7455 | R | HpyB8ORF1552P (100% identity) | Hpy128713ORF7450P | |
| 7460 | biotin synthase | |||