Helicobacter pylori 35A |
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Putative Helicobacter pylori 35A RM systems
Ref: Muzny,D. et al. unpublished
REBASE ref # 12323
Complete sequence: 1,566,655 bp
GenBank #: CP002096
REBASE acronym: Hpy35
Org_num: 6570
All begin HMPREF4655_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20125 | thymidylate synthase, flavin-dependent | |||
| 20126 | S | S.Hpy1357ORFAP (100% identity) | S.Hpy35ORF20128P | |
| 20127 | 258 aa hypothetical protein | |||
| 20128 | M | M.Hpy1357ORFAP (100% identity) | M.Hpy35ORF20128P | |
| 20129 | R | Hpy1357ORFAP (100% identity) | Hpy35ORF20128P | |
| 20130 | 235 aa hypothetical protein | |||
| 20681 | polyphosphate kinase 1 | |||
| 20682 | S | S.Hpy1357ORFQP (99% identity) | S.Hpy35ORF20683P | |
| 20683 | M | M.Hpy1357ORFQP (100% identity) | M.Hpy35ORF20683P | |
| ??? | R | Hpy1357ORFQP (100% identity) | Hpy35ORF20683P | |
| 20686 | 631 aa hypothetical protein | |||
| 20746 | DNA (cytosine-5-)-methyltransferase | |||
| 20747 | M | M.Hpy1357ORFA1P (100% identity) | M.Hpy35ORF20747P | |
| 20748 | S | S.Hpy35ORF20809P (100% identity) | S.Hpy35ORF20747P | |
| 20749 | 53 aa hypothetical protein | |||
| 20750 | R | Hpy1357ORFA1P (100% identity) | Hpy35ORF20747P | |
| 20751 | hydroxyethylthiazole kinase | |||
| 20808 | cadmium-exporting ATPase | |||
| 20809 | S | S.Hpy35ORF20747P (100% identity) | S.Hpy35ORF20809P | |
| 20810 | 53 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20008 | glycosyltransferase, family 8 | |||
| 20009 | M | M.HpyOK88ORFCP (100% identity) | GAATTC | M.Hpy35ORF20009P |
| 20010 | R | Hpy1357ORFGP (100% identity) | GAATTC | Hpy35ORF20009P |
| 20011 | UDP-N-acetylmuramate dehydrogenase | |||
| 20066 | DNA-directed DNA polymerase | |||
| 20067 | S | S.Hpy1357ORFZP (100% identity) | S.Hpy35ORF20067P | |
| 20069 | RM | Hpy1357ORFZP (100% identity) | Hpy35ORF20067P | |
| 20071 | 185 aa hypothetical protein | |||
| 20111 | transcription termination factor NusA | |||
| 20112 | RM | Hpy1357ORFJP (100% identity) | Hpy35ORF20112P | |
| 20113 | type III restriction enzyme, res subunit | |||
| 20149 | 68 aa hypothetical protein | |||
| 20150 | M | M.Hpy1357ORFLP (100% identity) | TGCA | M.Hpy35ORF20150P |
| 20151 | R | Hpy1357ORFLP (100% identity) | TGCA | Hpy35ORF20150P |
| 20152 | C-5 cytosine-specific DNA methylase | |||
| 20151 | 243 aa hypothetical protein | |||
| ??? | M | M.Hpy1357ORFMP (100% identity) | M.Hpy35ORF20152P | |
| 20154 | 53 aa hypothetical protein | |||
| 20243 | adenine-specific DNA methylase | |||
| 20246 | M | M1.HpyMKF10ORF75P (100% identity) | GAAGA | M1.Hpy35ORF20246P |
| 20247 | M | M1.Hpyfe70ORF7000P (100% identity) | GAAGA | M2.Hpy35ORF20246P |
| 20248 | R | Hpy1357ORFNP (100% identity) | GAAGA | Hpy35ORF20246P |
| 20249 | response regulator receiver domain protein | |||
| 20259 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | Hpy1357ORFPP (100% identity) | Hpy35ORF20260P | |
| 20263 | DNA (cytosine-5-)-methyltransferase | |||
| ??? | DNA methyltransferase | |||
| 20263 | M | M.Hpy1357ORFOP (100% identity) | GANTC | M.Hpy35ORF20263P |
| 20264 | R | Hpy1357ORFOP (100% identity) | GANTC | Hpy35ORF20263P |
| 20265 | 50 aa hypothetical protein | |||
| 20273 | integral membrane protein TerC family | |||
| 20274 | M | M1.Hpy1357ORFIP (100% identity) | CCTC | M1.Hpy35ORF20274P |
| 20275 | M | M2.Hpy1357ORFIP (100% identity) | CCTC | M2.Hpy35ORF20274P |
| 20276 | sodium/proline symporter | |||
| 20361 | glycosyltransferase, family 11 | |||
| 20362 | M | M.Hpy1357ORFBP (100% identity) | GATC | M.Hpy35ORF20362P |
| ??? | R | R1.Hpy1357ORFBP (100% identity) | GATC | Hpy35ORF20362AP |
| 20363 | R | R2.Hpy1357ORFBP (100% identity) | GATC | Hpy35ORF20362BP |
| 20364 | [acyl-carrier-protein] S-malonyltransferase | |||
| 20503 | exodeoxyribonuclease VII, large subunit | |||
| ??? | R | HpyOK303ORFAP (87% identity) | CCGG | Hpy35ORF20505P |
| 20505 | M | M.Hpy1357ORFCP (98% identity) | CCGG | M.Hpy35ORF20505P |
| 20506 | ATP-dependent chaperone protein ClpB | |||
| 20553 | polysaccharide deacetylase | |||
| 20554 | R | Hpy1357ORFDP (96% identity) | CTNAG | Hpy35ORF20555P |
| 20555 | M | M.Hpy1357ORFDP (100% identity) | CTNAG | M.Hpy35ORF20555P |
| 20556 | 122 aa hypothetical protein | |||
| 20701 | outer membrane protein | |||
| 20702 | M | M.Hpy1357ORFSP (100% identity) | ATTAAT | M.Hpy35ORF20702P |
| 20703 | 282 aa hypothetical protein | |||
| 20704 | GTP-binding protein TypA | |||
| 20705 | M | M.Hpy1357ORFTP (100% identity) | ACNGT | M.Hpy35ORF20705P |
| 20707 | R | HpyMKM6ORF482P (100% identity) | ACNGT | Hpy35ORF20705P |
| 20708 | DNA (cytosine-5-)-methyltransferase | |||
| 20707 | 207 aa hypothetical protein | |||
| 20708 | M | M.Hpy1357ORFRP (100% identity) | ACGT | M.Hpy35ORF20708P |
| 20709 | R | HpyPF57ORF2535P (99% identity) | ACGT | Hpy35ORF20708P |
| 20711 | 314 aa hypothetical protein | |||
| 20744 | PAP2 family protein | |||
| 20745 | R | Hpy55ORF910P (99% identity) | GGCC | Hpy35ORF20746P |
| 20746 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpy35ORF20746P |
| 20747 | type I restriction-modification system, M | |||
| 20928 | 436 aa hypothetical protein | |||
| 20929 | RM | Hpy1357ORFXP (100% identity) | Hpy35ORF20929AP | |
| 20933 | RM | HpyK25ORF3575P (36% identity) | Hpy35ORF20929BP | |
| 20934 | cysteine-rich domain protein | |||
| 21099 | peptidase, M23 family | |||
| 21100 | R | Hpy1357ORFUP (95% identity) | GTAC | Hpy35ORF21102P |
| 21102 | M | M.Hpy1357ORFUP (99% identity) | GTAC | M.Hpy35ORF21102P |
| 21103 | DNA gyrase, B subunit | |||
| 21141 | flagellar hook protein FlgE | |||
| 21142 | R | Hpy1357ORFVP (100% identity) | GTNNAC | Hpy35ORF21143P |
| 21143 | M | M.Hpy1357ORFVP (98% identity) | GTNNAC | M.Hpy35ORF21143P |
| 21144 | UvrD/REP helicase | |||
| 21275 | acetyl-CoA carboxylase, biotin carboxylase | |||
| 21276 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpy35ORF21276P |
| 21277 | R | Hpy1357ORFHP (100% identity) | TCNNGA | Hpy35ORF21276P |
| 21278 | 214 aa hypothetical protein | |||
| 21309 | 156 aa hypothetical protein | |||
| 21310 | M | M.Hpy1357ORFEP (100% identity) | GCGC | M.Hpy35ORF21310P |
| 21311 | 76 aa hypothetical protein | |||
| 21397 | haloacid dehalogenase-like hydrolase | |||
| 21398 | M | M.HpyF221ORFRP (100% identity) | CATG | M.Hpy35ORF21398P |
| 21399 | 59 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20112 | Eco57I restriction endonuclease | |||
| 20113 | R | Hpy1357ORFKP (100% identity) | Hpy35ORF20114P | |
| ??? | M | M.Hpy1357ORFKP (100% identity) | M.Hpy35ORF20114P | |
| 20116 | ATP-dependent DNA helicase RecG | |||
| 20241 | rod shape-determining protein MreC | |||
| 20242 | R | Hpy35ORF20243P (100% identity) | Hpy35ORF20242P | |
| 20243 | adenine-specific DNA methylase | |||
| 20241 | rod shape-determining protein MreC | |||
| 20242 | R | Hpy35ORF20242P (100% identity) | Hpy35ORF20243P | |
| 20243 | M | M.Hpy1357ORFYP (100% identity) | M.Hpy35ORF20243P | |
| 20246 | DNA (cytosine-5-)-methyltransferase | |||
| 21557 | DNA/RNA non-specific endonuclease | |||
| 21558 | M | M.Hpy1357ORFWP (100% identity) | M.Hpy35ORF21558P | |
| 21559 | R | Hpy1357ORFWP (97% identity) | Hpy35ORF21558P | |
| 21560 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21091 | ribosomal protein L9 | |||
| 21092 | R | HpyJ017GmrSDP (81% identity) | Hpy35GmrSDP | |
| 21093 | glutamine synthetase, type I | |||