Escherichia coli A1_181 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli A1_181 RM systems
Ref: Ahlstrom,C.A. et al. Antimicrob. Agents Chemother. (2019) In press
REBASE ref # 28851
| Sequence length: | GenBank #: | |
| Chromosome: | 4,778,240 bp | CP040067 |
| plasmid p_unnamed1_KPC2: | 210,031 bp | CP040068 |
| plasmid p_unnamed2: | 97,582 bp | CP040069 |
| plasmid p_unnamed3: | 82,718 bp | CP040070 |
REBASE acronym: EcoA1181
Org_num: 34898
All begin FDP43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4465 | 65 aa hypothetical protein | |||
| 4470 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoA1181ORF4475P |
| 4475 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoA1181ORF4475P |
| 4480 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoA1181ORF4475P |
| 4485 | 540 aa hypothetical protein | |||
| 6310 | IS1 family transposase | |||
| 6315 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoA1181ORF6325P |
| 6320 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoA1181ORF6325P |
| 6325 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoA1181ORF6325P |
| 6330 | IS3 family transposase | |||
| plasmid p_unnamed3 | ||||
| 25680 | IS1 family transposase | |||
| 25685 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoA1181ORF25695P |
| 25690 | S | S.EcoS497ORF620P (100% identity) | CAAYNNNNNNCTGG | S.EcoA1181ORF25695P |
| 25695 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoA1181ORF25695P |
| 25700 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2045 | cell division protein DamX | |||
| 2050 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoA1181DamP |
| 2055 | ribulose-phosphate 3-epimerase | |||
| 2675 | DUF2556 domain-containing protein | |||
| 2680 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoA1181ORF2680P |
| 2685 | DNA-binding transcriptional regulator Fis | |||
| 9475 | phosphohydrolase | |||
| 9480 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoA1181DcmP |
| 9485 | V | V.EcosEC7DcmP (100% identity) | V.EcoA1181DcmP | |
| 9490 | drug/metabolite exporter YedA | |||
| 19540 | phage lysis protein EssD | |||
| 19545 | M | M.Sso63633ORF22290P (100% identity) | M.EcoA1181ORF19545P | |
| 19550 | TrmB family transcriptional regulator | |||
| plasmid p_unnamed1_KPC2 | ||||
| 23670 | IS21-like element ISAs29 family transposase | |||
| 23675 | M | M.YrupYR1ORFAP (83% identity) | M.EcoA1181ORF23675P | |
| 23680 | 149 aa hypothetical protein | |||
| 24020 | 100 aa hypothetical protein | |||
| 24025 | M | M.YrupYR1ORFCP (100% identity) | M.EcoA1181ORF24025P | |
| 24030 | 158 aa hypothetical protein | |||
| plasmid p_unnamed2 | ||||
| 25185 | 63 aa hypothetical protein | |||
| 25200 | M | M.EcoR0233ORF22885P (100% identity) | M.EcoA1181ORF25200P | |
| 25205 | recombination-associated protein RdgC | |||
| plasmid p_unnamed3 | ||||
| 25540 | 73 aa hypothetical protein | |||
| 25545 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoA1181ORF25545P |
| 25550 | 0 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13390 | isocitrate dehydrogenase | |||
| 13395 | R | EcosEC27McrCP (100% identity) | EcoA1181McrCP | |
| 13400 | R | EcoteDMcrBP (100% identity) | EcoA1181McrBP | |
| 13405 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15030 | replication endonuclease | |||
| 15035 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoA1181ORF15035P |
| 15040 | TraR/DksA family transcriptional regulator | |||