Helicobacter pylori 476-C-EK5 |
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Putative Helicobacter pylori 476-C-EK5 RM systems
Ref: Ailloud,F. et al. Nat Commun 10 (1), 2273 (2019)
REBASE ref # 28879
Complete sequence: 1,601,381 bp
GenBank #: CP032474
REBASE acronym: Hpy476C
Org_num: 34988
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyGE21ORF6935P (100% identity) | S.Hpy476CORFCP | |
| ??? | M | M.Hpy476AORFCP (100% identity) | M.Hpy476CORFCP | |
| ??? | S | S.Hpy476A2ORFPP (100% identity) | S.Hpy476CORFWP | |
| ??? | M | M.Hpy476AORFVP (100% identity) | M.Hpy476CORFWP | |
| ??? | R | Hpy476AORFVP (99% identity) | Hpy476CORFWP | |
| ??? | R | Hpy476A2ORFUP (99% identity) | Hpy476CORFQP | |
| ??? | S | S.HpyKH14ORFLP (95% identity) | S.Hpy476CORFQP | |
| ??? | M | M.Hpy476AORFOBP (100% identity) | M.Hpy476CORFQBP | |
| ??? | M | type I restriction-modification system subunit M | M.Hpy476CORFQAP | |
| ??? | DNA cytosine methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DEAD/DEAH box helicase | |||
| ??? | RM | Hpy476AORFC1P (100% identity) | Hpy476CORFMP | |
| ??? | RM | type II restriction modification enzyme methyltransferase | Hpy476CORFAP | |
| ??? | S | S1.Hpy476AORFAP (100% identity) | S1.Hpy476CORFAP | |
| ??? | S | S2.Hpy476A2ORFAP (100% identity) | S2.Hpy476CORFAP | |
| ??? | R | Hpy476AORFBP (100% identity) | GAATTC | Hpy476CORFBP |
| ??? | M | M.Hpy476AORFBP (100% identity) | GAATTC | M.Hpy476CORFBP |
| ??? | hypothetical protein | |||
| ??? | M | M.Hpy476AORFZP (77% identity) | M.Hpy476CORFA1P | |
| ??? | R | Hpy13207VIIP (93% identity) | Hpy476CORFA1P | |
| ??? | hypothetical protein | |||
| ??? | M | M.Hpy476AORFXP (100% identity) | GANTC | M.Hpy476CORFYP |
| ??? | R | Hpy476AORFXP (100% identity) | GANTC | Hpy476CORFYP |
| ??? | RM | Hpy476AORFWP (99% identity) | Hpy476CORFXP | |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | R | HpyLI25VIP (100% identity) | Hpy476CORFDP | |
| ??? | M | M.Hpy476AORFDP (100% identity) | M.Hpy476CORFDP | |
| ??? | M | M.Hpy476A2ORFFP (100% identity) | M.Hpy476CORFEP | |
| ??? | M | M.Hpy476AORFFP (100% identity) | M.Hpy476CORFFP | |
| ??? | M | M.Hpy476AORFSP (100% identity) | ATTAAT | M.Hpy476CORFTP |
| ??? | DNA adenine methylase | |||
| ??? | modification methylase VspI domain protein | |||
| ??? | M | M.Hpy476AORFTP (100% identity) | ACNGT | M.Hpy476CORFUP |
| ??? | R | Hpy476AORFTP (100% identity) | ACNGT | Hpy476CORFUP |
| ??? | DNA cytosine methyltransferase | |||
| ??? | GIY-YIG nuclease family protein | |||
| ??? | M | M.Hpy476AORFUP (100% identity) | ACGT | M.Hpy476CORFVP |
| ??? | R | Hpy476AORFUP (100% identity) | ACGT | Hpy476CORFVP |
| ??? | M | M.Hpy476AORFRP (100% identity) | M.Hpy476CORFSP | |
| ??? | R | Hpy476AORFRP (100% identity) | Hpy476CORFSP | |
| ??? | type I restriction-modification system subunit M | |||
| ??? | M | M.HpyT021ORF4100P (100% identity) | M.Hpy476CORFRP | |
| ??? | R | Hpy476AORFPP (100% identity) | Hpy476CORFRP | |
| ??? | R | Hpy476AORFHP (100% identity) | GTNNAC | Hpy476CORFHP |
| ??? | M | M.Hpy476AORFHP (100% identity) | GTNNAC | M.Hpy476CORFHP |
| ??? | M | M.Hpy476AORFNP (100% identity) | M.Hpy476CORFPP | |
| ??? | R | Hpy476AORFNP (100% identity) | Hpy476CORFPP | |
| ??? | M | M.Hpy476AORFIP (100% identity) | CCGG | M.Hpy476CORFIP |
| ??? | R | Hpy476AORFIP (100% identity) | CCGG | Hpy476CORFIP |
| ??? | DNA -methyltransferase | |||
| ??? | endonuclease MjaVIP | |||
| ??? | M | M.Hpy476AORFJP (100% identity) | TCGA | M.Hpy476CORFJP |
| ??? | M | M.HpyCOL122VIII (96% identity) | GATC | M.Hpy476CORFOP |
| ??? | R | Hpy476AORFMP (100% identity) | GATC | Hpy476CORFOP |
| ??? | R | Hpy476AORFKP (100% identity) | CCTC | Hpy476CORFKP |
| ??? | M | M2.Hpy476AORFKP (99% identity) | CCTC | M2.Hpy476CORFKP |
| ??? | M | M1.HpyLI04IX (100% identity) | CCTC | M1.Hpy476CORFKP |
| ??? | R | Hpy476AORFLP (100% identity) | Hpy476CORFNP | |
| ??? | M | M.HpyLI07ORF7820P (100% identity) | M.Hpy476CORFNP | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyU306ORF7085P (96% identity) | M.Hpy476CORFLP | |
| ??? | R | Hpy476AORFB1P (100% identity) | Hpy476CORFLP | |
| ??? | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | Hpy476AORFYP (100% identity) | Hpy476CORFZP | |
| ??? | M | M.Hpy476AORFYP (100% identity) | M.Hpy476CORFZP | |
| ??? | hypothetical protein | |||
| ??? | R | Hpy476AORFGP (99% identity) | Hpy476CORFGP | |
| ??? | M | M.Hpy476AORFGP (100% identity) | M.Hpy476CORFGP | |