Helicobacter pylori 479-A2-EK4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori 479-A2-EK4 RM systems
Ref: Ailloud,F. et al. Nat Commun 10 (1), 2273 (2019)
REBASE ref # 28879
Complete sequence: 1,636,444 bp
GenBank #: CP032472
REBASE acronym: Hpy479A2
Org_num: 34990
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DNA cytosine methyltransferase | |||
| ??? | M | M.Hpy479C2ORFYP (99% identity) | M.Hpy479A2ORFXP | |
| ??? | S | S.HpySP03X (96% identity) | S.Hpy479A2ORFXP | |
| ??? | R | Hpy479CORFTP (100% identity) | Hpy479A2ORFXP | |
| ??? | S | S.Hpy479CORFRP (97% identity) | S.Hpy479A2ORFE1P | |
| ??? | R | Hpy479CORFLP (100% identity) | Hpy479A2ORFZP | |
| ??? | M | M.Hpy479CORFLP (97% identity) | M.Hpy479A2ORFZP | |
| ??? | S | S.Hpy479C2ORFB1P (100% identity) | S.Hpy479A2ORFZP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | Hpy479C2ORFMP (100% identity) | Hpy479A2ORFMP | |
| ??? | R | Hpy479CORFB1P (100% identity) | Hpy479A2ORFNP | |
| ??? | RM | Hpy479CORFA1P (100% identity) | Hpy479A2ORFOP | |
| ??? | type II restriction endonuclease | |||
| ??? | type II restriction modification enzyme methyltransferase | |||
| ??? | S | S1.Hpy479CORFA1P (96% identity) | S.Hpy479A2ORFPP | |
| ??? | type II restriction endonuclease | |||
| ??? | type II restriction endonuclease | |||
| ??? | S | S.Hpy479C2ORFQP (100% identity) | S.Hpy479A2ORFQP | |
| ??? | hypothetical protein | |||
| ??? | M | M.Hpy479CORFZP (100% identity) | GAAGA | M.Hpy479A2ORFSP |
| ??? | R | site-specific DNA-methyltransferase | GAAGA | Hpy479A2ORFSP |
| ??? | RM | Hpy479C2ORFTP (99% identity) | Hpy479A2ORFTP | |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| ??? | M | M.Hpy479CORFXP (100% identity) | GANTC | M.Hpy479A2ORFUP |
| ??? | R | Hpy479CORFXP (100% identity) | GANTC | Hpy479A2ORFUP |
| ??? | M | M.Hpy479CORFBP (100% identity) | M.Hpy479A2ORFBP | |
| ??? | M | M.Hpy479CORFCP (100% identity) | M.Hpy479A2ORFCP | |
| ??? | R | Hpy479CORFUP (100% identity) | TCNNGA | Hpy479A2ORFVP |
| ??? | M | M.Hpy479CORFUP (100% identity) | TCNNGA | M.Hpy479A2ORFVP |
| ??? | M | M.Hpy479CORFDP (100% identity) | GTNNAC | M.Hpy479A2ORFDP |
| ??? | R | Hpy479CORFDP (100% identity) | GTNNAC | Hpy479A2ORFDP |
| ??? | R | Hpy479CORFSP (100% identity) | Hpy479A2ORFWP | |
| ??? | M | M.HpyLI25ORF4045P (100% identity) | M.Hpy479A2ORFWP | |
| ??? | hypothetical protein | |||
| ??? | RM | Hpy479CORFQP (99% identity) | Hpy479A2ORFYP | |
| ??? | R | Hpy479CORFEP (100% identity) | GTAC | Hpy479A2ORFEP |
| ??? | M | M.Hpy479CORFEP (100% identity) | GTAC | M.Hpy479A2ORFEP |
| ??? | R | Hpy479CORFMP (100% identity) | Hpy479A2ORFA1P | |
| ??? | M | M.Hpy479CORFMP (100% identity) | M.Hpy479A2ORFA1P | |
| ??? | GIY-YIG nuclease family protein | |||
| ??? | DNA cytosine methyltransferase | |||
| ??? | R | GIY-YIG nuclease family protein | Hpy479A2ORFB1P | |
| ??? | M | M.Hpy479CORFNP (100% identity) | M.Hpy479A2ORFB1P | |
| ??? | modification methylase VspI domain protein | |||
| ??? | DNA adenine methylase | |||
| ??? | M | M.Hpy479CORFOP (100% identity) | ATTAAT | M.Hpy479A2ORFC1P |
| ??? | M | M.Hpy479CORFFP (100% identity) | M.Hpy479A2ORFFP | |
| ??? | M | M.Hpy479CORFGP (100% identity) | CCGG | M.Hpy479A2ORFGP |
| ??? | R | Hpy479CORFGP (99% identity) | CCGG | Hpy479A2ORFGP |
| ??? | DNA -methyltransferase | |||
| ??? | endonuclease MjaVIP | |||
| ??? | M | M.Hpy479CORFHP (100% identity) | TCGA | M.Hpy479A2ORFHP |
| ??? | M | M.Hpy479CORFIP (100% identity) | GATC | M.Hpy479A2ORFIP |
| ??? | R | Hpy479CORFIP (100% identity) | GATC | Hpy479A2ORFIP |
| ??? | R | Hpy479CORFJP (100% identity) | CCTC | Hpy479A2ORFJP |
| ??? | DNA methyltransferase | |||
| ??? | M | M2.Hpy479CORFJP (100% identity) | CCTC | M2.Hpy479A2ORFJP |
| ??? | R | Hpy479CORFKP (100% identity) | TGCA | Hpy479A2ORFKP |
| ??? | M | M.Hpy479CORFKP (100% identity) | TGCA | M.Hpy479A2ORFKP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Hpy479CORFC1P (100% identity) | M.Hpy479A2ORFLP | |
| ??? | R | Hpy479CORFC1P (100% identity) | Hpy479A2ORFLP | |
| ??? | R | Hpy479C2ORFAP (100% identity) | Hpy479A2ORFAP | |
| ??? | M | M.Hpy479CORFAP (100% identity) | M.Hpy479A2ORFAP | |
| ??? | R | Hpy479C2ORFRP (100% identity) | Hpy479A2ORFRP | |
| ??? | M | M.HpyT008ORF6505P (92% identity) | M.Hpy479A2ORFRP | |
| ??? | DUF1887 family protein | |||
| ??? | M | M.Hpy479CORFPP (99% identity) | M.Hpy479A2ORFD1P | |
| ??? | R | Hpy479CORFPP (100% identity) | Hpy479A2ORFD1P | |