Leclercia adecarboxylata Z96-1 |
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Putative Leclercia adecarboxylata Z96-1 RM systems
Ref: Sun,Q. et al. unpublished
REBASE ref # 29073
| Sequence length: | GenBank #: | |
| Chromosome: | 5,112,861 bp | CP040889 |
| plasmid pIMP-Z96-1: | 94,635 bp | CP040895 |
| plasmid pZ96-1_1: | 327,617 bp | CP040888 |
| plasmid pZ96-1_2: | 90,410 bp | CP040893 |
REBASE acronym: LadZ961
Org_num: 35768
All begin FHN83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2555 | IS3 family transposase | |||
| 2560 | S | S.EcoS30ORF6345P (17% identity) | S.LadZ961ORF2565P | |
| 2565 | M | M.EcoSTEC346ORFGP (99% identity) | M.LadZ961ORF2565P | |
| 2570 | 375 aa hypothetical protein | |||
| 7395 | 63 aa hypothetical protein | |||
| 7400 | R | RorVR1ORF8060P (97% identity) | LadZ961ORF7410P | |
| 7405 | S | S.RsaKH87ORF11385P (63% identity) | S.LadZ961ORF7410P | |
| 7410 | M | M.RorBORF22280P (97% identity) | M.LadZ961ORF7410P | |
| 7415 | recombinase family protein | |||
| 14185 | IS3 family transposase | |||
| 14190 | S | S.Sen80453ORF19660P (31% identity) | S.LadZ961ORF14195P | |
| 14195 | M | M.Sens12373ORF19415P (97% identity) | M.LadZ961ORF14195P | |
| 14200 | R | CspTSA1ORF20510P (90% identity) | LadZ961ORF14195P | |
| 14205 | IS110-like element IS4321 family transposase | |||
| 22440 | site-specific integrase | |||
| 22445 | M | M.KpnDM1ORF1055P (100% identity) | M.LadZ961ORF22445P | |
| 22450 | S | S.KpnDM1ORF1055P (100% identity) | S.LadZ961ORF22445P | |
| 22455 | R | KpnDM1ORF1055P (100% identity) | LadZ961ORF22445P | |
| 22460 | ISL3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2905 | drug/metabolite exporter YedA | |||
| 2910 | V | V.LspJ807DcmP (95% identity) | V.LadZ961DcmP | |
| 2915 | M | M.Ladbe1DcmP (95% identity) | M.LadZ961DcmP | |
| 2920 | phosphohydrolase | |||
| 5730 | 82 aa hypothetical protein | |||
| 5735 | M | M.EhoS5ORF7795P (83% identity) | M.LadZ961ORF5735P | |
| 5740 | GntR family transcriptional regulator | |||
| 9800 | ribulose-phosphate 3-epimerase | |||
| 9805 | M | M.Ladbe1DamP (98% identity) | M.LadZ961DamP | |
| 9810 | cell division protein DamX | |||
| 14150 | DEAD/DEAH box helicase | |||
| 14155 | R | CfrPSVORF4350P (100% identity) | LadZ961ORF14160P | |
| 14160 | M | M.Eko45523ORF21735P (98% identity) | M.LadZ961ORF14160P | |
| 14165 | 221 aa hypothetical protein | |||
| 21780 | 72 aa hypothetical protein | |||
| 21785 | M | M.LadM17ORF23595P (97% identity) | M.LadZ961ORF21785P | |
| 21790 | 59 aa hypothetical protein | |||
| plasmid pIMP-Z96-1 | ||||
| 27785 | resolvase | |||
| 27790 | R | YpsR1ORFAP (99% identity) | CCWGG | LadZ961ORF27795P |
| 27795 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.LadZ961ORF27795P |
| 27800 | IS1 family transposase | |||
| plasmid pZ96-1_1 | ||||
| 390 | 284 aa hypothetical protein | |||
| 395 | M | M.Ssp15303ORFEP (100% identity) | M.LadZ961ORF395P | |
| 400 | DNA-binding protein | |||
| 535 | 202 aa hypothetical protein | |||
| 540 | M | M.Ssp15303ORFDP (100% identity) | M.LadZ961ORF540P | |
| 545 | 106 aa hypothetical protein | |||
| 1260 | thermonuclease family protein | |||
| 1265 | M | M.Ecl3600ORF25110P (72% identity) | M.LadZ961ORF1265AP | |
| 1270 | IS3 family transposase | |||
| 1275 | M | DNA (cytosine-5-)-methyltransferase | M.LadZ961ORF1265BP | |
| 1280 | DUF1173 domain-containing protein | |||
| plasmid pZ96-1_2 | ||||
| 26825 | adenylosuccinate synthase | |||
| 26830 | M | M.LadE1ORF25820P (98% identity) | M.LadZ961ORF26830P | |
| 26835 | site-specific DNA-methyltransferase | |||
| 26830 | Dam family site-specific | |||
| 26835 | M | M.LadE1ORF25815P (83% identity) | M.LadZ961ORF26835P | |
| 26840 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14305 | aminobutyraldehyde dehydrogenase | |||
| 14310 | R | LadE61McrCP (95% identity) | LadZ961McrCP | |
| 14315 | R | Lad1McrBP (87% identity) | LadZ961McrBP | |
| 14320 | 94 aa hypothetical protein | |||