Salmonella enterica subsp. enterica serovar Agona USDA-ARS-USMARC-76333 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona USDA-ARS-USMARC-76333 RM systems
Ref: Nguyen,S.V. et al. unpublished
REBASE ref # 29022
Complete sequence: 4,794,633 bp
GenBank #: CP025446
REBASE acronym: Sen76333
Org_num: 35655
All begin CYL22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 23840 | toll/interleukin-1 receptor domain-containing | |||
| 23845 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen76333ORF23845P |
| 23850 | M | M2.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M2.Sen76333ORF23845P |
| 23855 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen76333ORF23845P |
| 23860 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen76333ORF23845P |
| 23865 | Fic family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5500 | phosphohydrolase | |||
| 5505 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen76333DcmP |
| 5510 | V | V.StyUK1DcmP (100% identity) | V.Sen76333DcmP | |
| 5515 | drug/metabolite exporter YedA | |||
| 14075 | phage portal protein | |||
| 14080 | R | SenS16ORF16875P (100% identity) | CGGCCG | Sen76333ORF14085P |
| 14085 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen76333ORF14085P |
| 14090 | 62 aa hypothetical protein | |||
| 14100 | replication endonuclease | |||
| 14105 | M | M.SenSH7ORF6070P (100% identity) | M.Sen76333ORF14105P | |
| 14110 | 75 aa hypothetical protein | |||
| 16865 | 335 aa hypothetical protein | |||
| 16870 | M | M.Sen6780ORF3195P (100% identity) | M.Sen76333ORF16870P | |
| 16875 | DUF2732 domain-containing protein | |||
| 17800 | Fis family transcriptional regulator | |||
| 17805 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen76333ORF17805P |
| 17810 | DUF2556 domain-containing protein | |||
| 18320 | ribulose-phosphate 3-epimerase | |||
| 18325 | M | M.StyTDamP (100% identity) | GATC | M.Sen76333DamP |
| 18330 | cell division protein DamX | |||
| 23775 | 97 aa hypothetical protein | |||
| 23780 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen76333ORF23780P |
| 23785 | DUF87 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1855 | MFS transporter | |||
| 1860 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen76333ORF1860P |
| 1865 | R | SenS12VPHORF9140P (100% identity) | CAGAG | Sen76333ORF1860P |
| 1870 | 33 aa hypothetical protein | |||