Xanthomonas campestris pv. campestris Xcc8004_Xcc1 |
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Putative Xanthomonas campestris pv. campestris Xcc8004_Xcc1 RM systems
Ref: Torres-Cortes,G. et al. unpublished
REBASE ref # 29043
Complete sequence: 5,169,528 bp
GenBank #: CP029483
REBASE acronym: Xca004
Org_num: 35735
All begin DFG55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1235 | 198 aa hypothetical protein | |||
| 1240 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.Xca004ORF1240P |
| 1245 | damage-inducible protein D | |||
| 1250 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.Xca004ORF1240P |
| 1255 | R | Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | Xca004ORF1240P |
| 1260 | M48 family peptidase | |||
| 5040 | aminodeoxychorismate/anthranilate synthase | |||
| 5045 | M | M.Xcacc2ORF2325P (100% identity) | M.Xca004ORF5045P | |
| 5050 | DNA-binding protein | |||
| 5055 | anticodon nuclease | |||
| 5060 | S | S.Xcacc2ORF2325P (100% identity) | S.Xca004ORF5045P | |
| 5065 | R | Xcacc2ORF2325P (100% identity) | Xca004ORF5045P | |
| 5070 | 121 aa hypothetical protein | |||
| 13865 | Mrr restriction system protein | |||
| 13870 | M | M.Xcacc2ORF16555P (100% identity) | GAGNNNNNNGTGC | M.Xca004ORF13870P |
| 13875 | hydroxyacid dehydrogenase | |||
| 13880 | S | S.Xcacc2ORF16555P (100% identity) | GAGNNNNNNGTGC | S.Xca004ORF13870P |
| 13885 | R | Xcacc2ORF16555P (100% identity) | GAGNNNNNNGTGC | Xca004ORF13870P |
| 13890 | 98 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9915 | IS3-like element IS1404 family transposase | |||
| 9920 | R | Xcacc2ORF20495P (100% identity) | Xca004ORF9920P | |
| 9925 | 0 aa hypothetical protein | |||
| 19680 | DEAD/DEAH box helicase | |||
| 19685 | M | Xho2001ORF17555P (99% identity) | M.Xca004ORF19685P | |
| 19690 | ImmA/IrrE family metallo-endopeptidase | |||
| 19760 | 81 aa hypothetical protein | |||
| 19765 | M | M.Xcacc2ORF10650P (100% identity) | M.Xca004ORF19765P | |
| 19770 | 70 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6445 | haloalkane dehalogenase | |||
| 6450 | R | Xcacc2ORF915P (100% identity) | GCCAGG | Xca004ORF6455P |
| 6455 | M | M.Xcacc2ORF915P (100% identity) | GCCAGG | M.Xca004ORF6455P |
| 6460 | Fic family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 340 | sensor histidine kinase | |||
| 345 | R | Xcacc2McrCP (100% identity) | Xca004McrCP | |
| 350 | R | Xcacc2McrBP (100% identity) | Xca004McrBP | |
| 355 | 71 aa hypothetical protein | |||
| 13860 | type II toxin-antitoxin system RelE/ParE family | |||
| 13865 | R | Xcacc2MrrP (100% identity) | Xca004MrrP | |
| 13870 | SAM-dependent DNA methyltransferase | |||