Escherichia coli 3385 |
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Putative Escherichia coli 3385 RM systems
Ref: Li,X. unpublished
REBASE ref # 22399
| Sequence length: | GenBank #: | |
| Chromosome: | 4,910,422 bp | CP029420 |
| plasmid unnamed1: | 101,340 bp | CP029421 |
| plasmid unnamed2: | 89,323 bp | CP029422 |
REBASE acronym: Eco3385
Org_num: 34895
All begin DFS94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19995 | endoribonuclease SymE | |||
| 20000 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Eco3385ORF20010P |
| 20005 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Eco3385ORF20010P |
| 20010 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Eco3385ORF20010P |
| 20015 | restriction endonuclease | |||
| 21870 | 61 aa hypothetical protein | |||
| 21875 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco3385ORF21880P |
| 21880 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco3385ORF21880P |
| 21885 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco3385ORF21880P |
| 21890 | 267 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 25955 | 158 aa hypothetical protein | |||
| 25960 | R | EcoMY18ORF24050P (100% identity) | Eco3385ORF25985P | |
| 25965 | S | S.EcoGD31ORF25740P (57% identity) | S2.Eco3385ORF25985P | |
| 25970 | IS1 family transposase | |||
| 25975 | glycosyltransferase | |||
| 25980 | S | S.EcoGD31ORF25740P (42% identity) | S1.Eco3385ORF25985P | |
| 25985 | M | M.Ecoi162ORF4671P (100% identity) | M.Eco3385ORF25985P | |
| 25990 | 0 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 26275 | type II toxin-antitoxin system | |||
| 26280 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.Eco3385ORF26280P |
| 26285 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Eco3385ORF26280P |
| 26290 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | Eco3385ORF26280P |
| 26295 | glycosyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 245 | 71 aa hypothetical protein | |||
| 250 | M | M.KpnYN1ORFGP (89% identity) | M.Eco3385ORF250P | |
| 255 | XRE family transcriptional regulator | |||
| 6035 | drug/metabolite exporter YedA | |||
| 6040 | V | V.SflC32DcmP (74% identity) | V.Eco3385DcmP | |
| 6045 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco3385DcmP |
| 6050 | phosphohydrolase | |||
| 13430 | Fis family transcriptional regulator | |||
| 13435 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco3385ORF13435P |
| 13440 | DUF2556 domain-containing protein | |||
| 14060 | ribulose-phosphate 3-epimerase | |||
| 14065 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco3385DamP |
| 14070 | cell division protein DamX | |||
| 19605 | IS3 family transposase | |||
| 19610 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.Eco3385ORF19610P |
| 19615 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco3385ORF19610P |
| 19620 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco3385ORF19610P |
| 19625 | restriction endonuclease | |||
| plasmid unnamed2 | ||||
| 26360 | 0 aa hypothetical protein | |||
| 26365 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco3385ORF26365P |
| 26370 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19620 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 19625 | R | EcosS9McrCP (100% identity) | Eco3385McrCP | |
| 19630 | R | EcosS3McrBP (100% identity) | Eco3385McrBP | |
| 19635 | 60 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid unnamed1 | ||||
| 25900 | 269 aa hypothetical protein | |||
| 25905 | M | M.EcoLR48ORF45220P (100% identity) | M.Eco3385ORF25905P | |
| 25910 | 76 aa hypothetical protein | |||