Escherichia coli A1_180 |
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Putative Escherichia coli A1_180 RM systems
Ref: Ahlstrom,C.A. et al. unpublished
REBASE ref # 28851
| Sequence length: | GenBank #: | |
| Chromosome: | 4,767,771 bp | CP040381 |
| plasmid unnamed1: | 317,051 bp | CP040382 |
| plasmid unnamed2: | 194,556 bp | CP040383 |
| plasmid unnamed3: | 118,204 bp | CP040384 |
REBASE acronym: EcoA1180
Org_num: 34897
All begin FE172_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4425 | 65 aa hypothetical protein | |||
| 4430 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoA1180ORF4435P |
| 4435 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoA1180ORF4435P |
| 4440 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoA1180ORF4435P |
| 4445 | 540 aa hypothetical protein | |||
| 6270 | IS1 family transposase | |||
| 6275 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoA1180ORF6285P |
| 6280 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoA1180ORF6285P |
| 6285 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoA1180ORF6285P |
| 6290 | IS3 family transposase | |||
| plasmid unnamed2 | ||||
| 25530 | type II toxin-antitoxin system Phd/YefM family | |||
| 25535 | M | M.Eco531ORFCP (99% identity) | M.EcoA1180ORF25535P | |
| 25540 | S | S.SspS13ORF175P (100% identity) | S.EcoA1180ORF25535P | |
| 25545 | R | EcoEc40ORF26010P (100% identity) | EcoA1180ORF25535P | |
| 25550 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2005 | cell division protein DamX | |||
| 2010 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoA1180DamP |
| 2015 | ribulose-phosphate 3-epimerase | |||
| 2635 | DUF2556 domain-containing protein | |||
| 2640 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoA1180ORF2640P |
| 2645 | DNA-binding transcriptional regulator Fis | |||
| 9430 | phosphohydrolase | |||
| 9435 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoA1180DcmP |
| 9440 | V | V.EcosEC7DcmP (100% identity) | V.EcoA1180DcmP | |
| 9445 | drug/metabolite exporter YedA | |||
| 19480 | phage lysis protein EssD | |||
| 19485 | M | M.Sso63633ORF22290P (100% identity) | M.EcoA1180ORF19485P | |
| 19490 | TrmB family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 23310 | 284 aa hypothetical protein | |||
| 23315 | M | M.Ssp15303ORFEP (100% identity) | M.EcoA1180ORF23315P | |
| 23320 | DNA-binding protein | |||
| 23455 | 202 aa hypothetical protein | |||
| 23460 | M | M.Ssp15303ORFDP (100% identity) | M.EcoA1180ORF23460P | |
| 23465 | 106 aa hypothetical protein | |||
| 24100 | nuclease | |||
| 24105 | M | M.Ssp15303DcmP (100% identity) | M.EcoA1180Dcm2P | |
| 24110 | DUF1173 domain-containing protein | |||
| plasmid unnamed3 | ||||
| 26535 | IS21-like element ISAs29 family transposase | |||
| 26540 | M | M.YrupYR1ORFAP (83% identity) | M.EcoA1180ORF26540P | |
| 26545 | 149 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13335 | isocitrate dehydrogenase | |||
| 13340 | R | EcosEC27McrCP (100% identity) | EcoA1180McrCP | |
| 13345 | R | EcoteDMcrBP (100% identity) | EcoA1180McrBP | |
| 13350 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14980 | replication endonuclease | |||
| 14985 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoA1180ORF14985P |
| 14990 | TraR/DksA family transcriptional regulator | |||