Helicobacter felis ATCC 49179 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter felis ATCC 49179 RM systems
Ref: Arnold,A. et al. unpublished
REBASE ref # 28351
Complete sequence: 1,672,681 bp
GenBank #: FQ670179 (NC_014810)
REBASE acronym: Hfe
Org_num: 6507
All begin HFELIS_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15880 | uncharacterized protein | |||
| 15890 | R | HaiASB7ORF4510P (83% identity) | HfeORF15930P | |
| 15900 | S | S.HaiASB7ORF4510P (70% identity) | S1.HfeORF15930P | |
| 15910 | S | S1.HfeORF15930P (35% identity) | S2.HfeORF15930P | |
| 15920 | uncharacterized protein | |||
| 15930 | M | M.HaiASB7ORF4510P (82% identity) | M.HfeORF15930P | |
| 15940 | phage uncharacterized protein, putative | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2080 | Outer membrane protein | |||
| 2090 | M | M.HheASB1ORF8950P (74% identity) | CATG | M.HfeORF2090P |
| 2100 | Tryptophan synthase alpha subunit | |||
| 5930 | hydantoin utilization protein B | |||
| ??? | R | Fnu1267IP (48% identity) | TCTAGA | HfeORF5960P |
| 5960 | M | M.Lba8ORF1235P (36% identity) | TCTAGA | M.HfeORF5960P |
| 5970 | membrane-associated protein | |||
| 6820 | HNH endonuclease domain protein | |||
| 6830 | M | M.HaiASB7ORF4230P (77% identity) | CCGG | M.HfeORF6830P |
| 6840 | 59 aa hypothetical protein | |||
| 7990 | diaminopimelate epimerase | |||
| 8000 | M | M.HaiASB7ORF13150P (87% identity) | GANTC | M.HfeORF8000P |
| 8010 | R | Hsu4022ORF4350P (55% identity) | GANTC | HfeORF8000P |
| 8020 | uncharacterized protein | |||
| 8950 | 50S ribosomal protein L9 | |||
| 8960 | M | M.HheASB1ORF11910P (95% identity) | M.HfeORF8960P | |
| 8970 | ribosomal pseudouridine synthase | |||
| 9840 | ribosomal pseudouridine synthase | |||
| 9850 | M | M.Csp7795ORF988P (62% identity) | GANTC | M.HfeORF9850P |
| 9860 | Sodium:sulfate symporter-family protein | |||
| 10480 | DNA methylase N-4/N-6 domain protein | |||
| ??? | M | M.HfeORF5225P (93% identity) | M.HfeORF10485P | |
| 10490 | 823 aa hypothetical protein HBZC1_00490 | |||
| 10480 | DNA methylase N-4/N-6 domain protein | |||
| ??? | M | M.HfeORF10485P (93% identity) | M.HfeORF5225P | |
| 10490 | 823 aa hypothetical protein HBZC1_00490 | |||
| 11730 | integral membrane protein,Permease | |||
| 11740 | R | Hsp0012ORF10580P (79% identity) | GATC | HfeORF11750P |
| 11750 | M | M.Hsp21005ORF12670P (85% identity) | GATC | M.HfeORF11750P |
| 11760 | alpha-(1,3)-fucosyltransferase | |||
| 12680 | 3-deoxy-D-manno-octulosonate 8-phosphate | |||
| 12690 | RM | Hhe1ORF18460P (76% identity) | HfeORF12690P | |
| 12700 | S | S.Hhe1ORF18460P (70% identity) | S1.HfeORF12690AP | |
| 12710 | S | S2.HsuHS1ORF9820P (78% identity) | S1.HfeORF12690BP | |
| 12720 | S | Che51209ORF1555P (8% identity) | S2.HfeORF12690AP | |
| 12730 | S | S2.Hhe1ORF18470P (67% identity) | S2.HfeORF12690BP | |
| 12740 | 1129 aa hypothetical protein HFELIS_12780 | |||
| 12840 | 66 aa hypothetical protein | |||
| 12850 | M | M.HsuHS1ORF1310P (30% identity) | M.HfeORF12850P | |
| 12860 | Modification methylase BamHII | |||
| 12850 | Modification methylase BamHI | |||
| 12860 | M | M.Hsp6451ORF8925P (73% identity) | CGWCG | M.HfeORF12860P |
| 12870 | R | Hsp6451ORF8925P (71% identity) | CGWCG | HfeORF12860P |
| 12880 | carbamoyl-phosphate synthase large chain | |||
| 12880 | carbamoyl-phosphate synthase large chain | |||
| 12890 | RM | Hsp21005ORF11300P (59% identity) | HfeORF12890P | |
| 12900 | uncharacterized protein | |||
| 13940 | uncharacterized protein | |||
| ??? | M | M.HfeORF5225P (90% identity) | M.HfeORF13945P | |
| 13950 | adenine specific DNA methyltransferase | |||
| 15470 | hydrogenase isoenzymes formation protein | |||
| 15480 | RM | HbiCORF9040P (72% identity) | HfeORF15480P | |
| 15490 | serine transporter | |||
| 15510 | predicted protein | |||
| 15520 | M | M.HbiCORF16620P (32% identity) | M.HfeORF15520P | |
| 15530 | DNA methylase N-4/N-6 domain protein | |||
| 15520 | adenine specific DNA methylase | |||
| 15530 | M | DNA methylase N-4/N-6 domain protein | AAGCTT | M.HfeORF15530P |
| 15540 | uncharacterized protein | |||