Rhodobacter sphaeroides HJ |
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Putative Rhodobacter sphaeroides HJ RM systems
Ref: Kobayashi,J. et al. J. Biosci. Bioeng. 112 (6), 602-605 (2011)
REBASE ref # 28898
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,263,112 bp | CP036419 |
| chromosome 2: | 1,186,739 bp | CP036420 |
REBASE acronym: RspHJ
Org_num: 35034
All begin EYE35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 5185 | 262 aa hypothetical protein | |||
| 5190 | S | S.Pst25392ORF6880P (94% identity) | S.RspHJORF5195P | |
| 5195 | M | M.Pst25392ORF6880P (96% identity) | M.RspHJORF5195P | |
| 5200 | R | PspR13ORF10245P (99% identity) | RspHJORF5195P | |
| 5205 | 131 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 235 | alkane 1-monooxygenase | |||
| 240 | M | M.RspWS8NORF12765P (100% identity) | GANTC | M.RspHJORF240P |
| 245 | ribonuclease HII | |||
| 1215 | DUF1376 domain-containing protein | |||
| 1220 | M | M.Pae617ORF20420P (54% identity) | M.RspHJORF1220P | |
| 1225 | DUF1064 domain-containing protein | |||
| 1245 | phosphoadenosine phosphosulfate reductase | |||
| 1250 | M | M.Pst25392ORF12400P (34% identity) | M.RspHJORF1250P | |
| 1255 | DNA-binding protein | |||
| 1375 | 269 aa hypothetical protein | |||
| 1380 | M | M.RspLJ20ORF18575P (97% identity) | M.RspHJORF1380P | |
| 1385 | histidine kinase | |||
| 5300 | helix-turn-helix domain-containing protein | |||
| 5305 | M | M2.Szo19623ORF16935P (95% identity) | M.RspHJORF5305P | |
| 5310 | DNA cytosine methyltransferase | |||
| 5305 | site-specific DNA-methyltransferase | |||
| 5310 | M | M1.Pye20ORF20175P (88% identity) | M.RspHJORF5310P | |
| 5315 | 71 aa hypothetical protein | |||
| 5560 | NgoFVII family restriction endonuclease | |||
| 5565 | M | M1.PcoRK1I (94% identity) | M1.RspHJORF5565P | |
| 5570 | M | M1.Pye20ORF20325P (96% identity) | ACTGGG | M2.RspHJORF5565P |
| 5575 | 132 aa hypothetical protein | |||
| 11335 | DUF2971 domain-containing protein | |||
| 11340 | M | M.RspWS8NORF465P (98% identity) | M.RspHJORF11340P | |
| 11345 | 269 aa hypothetical protein | |||
| chromosome 2 | ||||
| 17025 | TIR domain-containing protein | |||
| 17030 | M | M.RspWS8NORF17994P (96% identity) | M.RspHJORF17030P | |
| 17035 | phage tail protein | |||
| 19555 | 225 aa hypothetical protein | |||
| 19560 | V | V.Rsp0142ORF7080P (85% identity) | V.RspHJORF19565P | |
| 19565 | M | M3.Rsp0142ORF7080P (84% identity) | M.RspHJORF19565P | |
| 19570 | DUF2971 domain-containing protein | |||
| 19595 | 496 aa hypothetical protein | |||
| 19600 | M | 290 aa hypothetical protein | M.RspHJORF19600P | |
| 19605 | 233 aa hypothetical protein | |||
| 21185 | 219 aa hypothetical protein | |||
| 21190 | M | M.Rsp17029ORF3296P (98% identity) | M.RspHJORF21190P | |
| 21195 | 84 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 20190 | 81 aa hypothetical protein | |||
| 20195 | R | Rba558McrCP (87% identity) | RspHJMcrCP | |
| 20200 | R | LspBMJM1McrB2P (43% identity) | RspHJMcrBP | |
| 20215 | pseudogene | |||