Escherichia coli 108 |
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Putative Escherichia coli 108 RM systems
Ref: Bono,J.L. and Arthur,T.M. unpublished
REBASE ref # 22851
| Sequence length: | GenBank #: | |
| Chromosome: | 5,466,440 bp | CP028693 |
| plasmid pTA108: | 92,730 bp | CP028694 |
REBASE acronym: Eco108B
Org_num: 34664
All begin C9E37_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25765 | DUF262 domain-containing protein | |||
| 25770 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco108BORF25775P |
| 25775 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco108BORF25775P |
| 25780 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco108BORF25775P |
| 25785 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2455 | protein DamX | |||
| 2460 | M | DNA adenine methylase | GATC | M.Eco108BDamP |
| 2465 | ribulose-phosphate 3-epimerase | |||
| 3005 | DUF2556 domain-containing protein | |||
| 3010 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco108BORF3010P |
| 3015 | Fis family transcriptional regulator | |||
| 9350 | recombination protein NinB | |||
| 9355 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco108BORF9355P |
| 9360 | NinE family protein | |||
| 10860 | phosphohydrolase | |||
| 10865 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco108BDcmP |
| 10870 | V | V.EcosPA8DcmP (100% identity) | V.Eco108BDcmP | |
| 10875 | drug/metabolite exporter YedA | |||
| 14920 | 329 aa hypothetical protein | |||
| 14925 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco108BORF14925P | |
| 14930 | 81 aa hypothetical protein | |||
| 15830 | 61 aa hypothetical protein | |||
| 15845 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco108BORF15845P | |
| 15850 | lipoprotein | |||
| 18990 | NinE family protein | |||
| 18995 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco108BORF18995P |
| 19000 | recombination protein NinB | |||
| 26030 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco108BORF26030P |
| 26035 | ATP-dependent helicase | |||
| plasmid pTA108 | ||||
| 29430 | 59 aa hypothetical protein | |||
| 29435 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco108BORF29435P | |
| 29440 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25785 | endoribonuclease SymE | |||
| ??? | R | EcoX21GmrDP (100% identity) | Eco108BGmrDP | |
| 25795 | R | Ecos1613GmrSP (100% identity) | Eco108BGmrSP | |
| 25800 | DUF1127 domain-containing protein | |||