Escherichia coli 116 |
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Putative Escherichia coli 116 RM systems
Ref: Bono,J.L. and Arthur,T.M. unpublished
REBASE ref # 22851
| Sequence length: | GenBank #: | |
| Chromosome: | 5,453,906 bp | CP028671 |
| plasmid pTA116: | 93,184 bp | CP028673 |
REBASE acronym: Eco116B
Org_num: 34672
All begin C9E45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25600 | DUF262 domain-containing protein | |||
| 25605 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco116BORF25610P |
| 25610 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco116BORF25610P |
| 25615 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco116BORF25610P |
| 25620 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2460 | protein DamX | |||
| 2465 | M | DNA adenine methylase | GATC | M.Eco116BDamP |
| 2470 | ribulose-phosphate 3-epimerase | |||
| 3010 | DUF2556 domain-containing protein | |||
| 3015 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco116BORF3015P |
| 3020 | Fis family transcriptional regulator | |||
| 10315 | recombination protein NinB | |||
| 10320 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco116BORF10320P |
| 10325 | NinE family protein | |||
| 11265 | phosphohydrolase | |||
| 11270 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco116BDcmP |
| 11275 | V | V.EcosPA8DcmP (100% identity) | V.Eco116BDcmP | |
| 11280 | drug/metabolite exporter YedA | |||
| 15820 | 61 aa hypothetical protein | |||
| 15835 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco116BORF15835P | |
| 15840 | lipoprotein | |||
| 23505 | LexA family transcriptional regulator | |||
| 23510 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.Eco116BORF23510P |
| 23515 | PerC family transcriptional regulator | |||
| 25870 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco116BORF25870P |
| 25875 | ATP-dependent helicase | |||
| 25985 | 87 aa hypothetical protein | |||
| 25990 | M | M.EcoZ1836ORF24740P (100% identity) | RGGNCCY | M.Eco116BORF25990P |
| 25995 | R | EcoZ1836ORF24740P (100% identity) | RGGNCCY | Eco116BORF25990P |
| 26000 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.Eco116BORF25990P |
| 26005 | DUF4102 domain-containing protein | |||
| plasmid pTA116 | ||||
| 29435 | 101 aa hypothetical protein | |||
| 29440 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco116BORF29440P | |
| 29445 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25620 | endoribonuclease SymE | |||
| ??? | R | EcoX21GmrDP (100% identity) | Eco116BGmrDP | |
| 25630 | R | Ecos1613GmrSP (100% identity) | Eco116BGmrSP | |
| 25635 | DUF1127 domain-containing protein | |||