Helicobacter pylori BCS100H1 |
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Putative Helicobacter pylori BCS100H1 RM systems
Ref: Kennemann,L. et al. Proc. Natl. Acad. Sci. U.S.A. 108 (12), 5033-5038 (2011)
REBASE ref # 28469
Contig set: 1,548,400 bp
GenBank #: CADC00000000 (NZ_CADC00000000)
REBASE acronym: HpyH1
Org_num: 34624
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.Hpy8C10ORFYP (100% identity) | M.HpyH1ORFPP | |
| 2 | DNA cytosine methyltransferase | |||
| ??? | S | S.Hpy8C10ORFC1P (100% identity) | S.HpyH1ORFD1P | |
| 156 | glutamine--fructose-6-phosphate transaminase | |||
| 159 | S | S.Hpy8C10ORFB1P (100% identity) | S.HpyH1ORFZP | |
| 160 | M | M.Hpy8C10ORFB1P (100% identity) | M.HpyH1ORFZP | |
| 161 | IS607 family transposase | |||
| 162 | transposase | |||
| ??? | R | Hpy8C10ORFB1P (100% identity) | HpyH1ORFZP | |
| 166 | M48 family peptidase | |||
| 468 | polyphosphate kinase 1 | |||
| 469 | S | S.Hpy8C10ORFXP (100% identity) | S.HpyH1ORFHP | |
| 470 | M | M.Hpy8C10ORFXP (100% identity) | M.HpyH1ORFHP | |
| 471 | R | Hpy8C10ORFXP (100% identity) | HpyH1ORFHP | |
| 472 | 195 aa hypothetical protein N198_06625 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | type I restriction-modification system subunit M | |||
| 2 | M | M.Hpy8C10ORFZP (100% identity) | M.HpyH1ORFQP | |
| ??? | R | Hpy8C10ORFZP (100% identity) | HpyH1ORFQP | |
| 6 | 82 aa hypothetical protein HPHPP11B_1069 | |||
| 1 | M | M.Hpy8C10ORFTP (100% identity) | ATTAAT | M.HpyH1II |
| 2 | modification methylase VspI domain protein | |||
| 3 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4 | M | M.Hpy8C10ORFUP (100% identity) | GCGC | M.HpyH1ORFBP |
| 5 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 5 | 112 aa hypothetical protein | |||
| ??? | M | M.Hpy8C10ORFJP (100% identity) | M.HpyH1ORFUP | |
| 9 | R | Hpy8C10ORFJP (100% identity) | ACNGT | HpyH1ORFUP |
| 11 | DNA -methyltransferase | |||
| 9 | GIY-YIG nuclease family protein | |||
| 11 | M | M.Hpy8C10ORFHP (100% identity) | M.HpyH1ORFVP | |
| 12 | R | Hpy8C10ORFHP (100% identity) | HpyH1ORFVP | |
| 15 | catalase family peroxidase | |||
| 17 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 18 | R | Hpy8C10ORFLP (100% identity) | GTNNAC | HpyH1VIIIP |
| 19 | M | M.Hpy8C10ORFLP (99% identity) | GTNNAC | M.HpyH1VIII |
| 20 | ATP-dependent helicase | |||
| 21 | Laminin subunit alpha-2 precursor | |||
| 23 | R | Hpy8C10ORFPP (100% identity) | TCNNGA | HpyH1XIVP |
| 24 | M | M.Hpy8C10ORFPP (100% identity) | TCNNGA | M.HpyH1XIV |
| 25 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 59 | restriction endonuclease subunit S | |||
| 60 | RM | Hpy8C10ORFCP (100% identity) | HpyH1ORFWP | |
| 61 | ComF family protein | |||
| 43 | DNA topoisomerase subunit B | |||
| 45 | M | M.Hpy8C10ORFEP (100% identity) | GTAC | M.HpyH1ORFIP |
| 46 | R | Hpy8C10ORFEP (100% identity) | GTAC | HpyH1ORFIP |
| 47 | metalloendopeptidase like protein | |||
| 52 | outer membrane protein | |||
| 53 | M | M.Hpy8C10ORFOP (100% identity) | TCNGA | M.HpyH1X |
| 54 | R | Hpy8C10ORFOP (100% identity) | TCNGA | HpyH1XP |
| 56 | phosphopentomutase | |||
| 132 | 362 aa hypothetical protein HMPREF1411_00815 | |||
| ??? | RM | Hpy8C10ORFGP (100% identity) | HpyH1ORFXP | |
| 136 | DEAD/DEAH box helicase | |||
| 189 | 68 aa hypothetical protein | |||
| 190 | M | M.Hpy8C10ORFRP (100% identity) | TGCA | M.HpyH1XV |
| 191 | R | Hpy8C10ORFRP (100% identity) | TGCA | HpyH1XVP |
| 194 | 131 aa hypothetical protein | |||
| 199 | exodeoxyribonuclease VII large subunit | |||
| 200 | M | M.Hpy8C10ORFVP (100% identity) | TCGA | M.HpyH1IX |
| 201 | 78 aa hypothetical protein HMPREF1401_01153 | |||
| 203 | 63 aa hypothetical protein | |||
| 204 | R | Hpy57VP (95% identity) | CCGG | HpyH1IIIP |
| 206 | M | M.Hpy8C10ORFWP (100% identity) | CCGG | M.HpyH1III |
| 207 | AAA family ATPase | |||
| 281 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 282 | R | Hpy8C10ORFNP (100% identity) | CTNAG | HpyH1VP |
| 283 | M | M.Hpy8C10ORFNP (100% identity) | CTNAG | M.HpyH1V |
| 284 | uncharacterized protein | |||
| 332 | site-specific DNA-methyltransferase | |||
| 334 | M | M2.Hpyfe101ORF6985P (100% identity) | GAAGA | M1.HpyH1VI |
| 335 | M | M1.Hpy8C10ORFBP (100% identity) | GAAGA | M2.HpyH1VI |
| 336 | R | Hpy8C10ORFBP (100% identity) | GAAGA | HpyH1VIP |
| 337 | copper response regulator transcription factor CrdR | |||
| 349 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | Hpy8C10ORFFP (100% identity) | HpyH1ORFA1P | |
| 354 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| 354 | M | M.HpySG38X (100% identity) | GANTC | M.HpyH1VII |
| 355 | R | Hpy8C10ORFMP (100% identity) | GANTC | HpyH1VIIP |
| 356 | S41 family peptidase | |||
| 365 | TerC family protein | |||
| 367 | M | M1.Hpy8C10ORFAP (100% identity) | CCTC | M1.HpyH1IV |
| 369 | M | M2.Hpy8C10ORFAP (100% identity) | CCTC | M2.HpyH1IVP |
| 370 | sodium/proline symporter | |||
| 438 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 440 | R | Hpy8C10ORFQP (100% identity) | GATC | HpyH1XVIP |
| 441 | M | M.Hpy8C10ORFQP (100% identity) | GATC | M.HpyH1XVI |
| 443 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | biotin synthase | |||
| 5 | R | Hpy87A3ORFCP (100% identity) | HpyH1ORFDP | |
| 6 | M | M.Hpy8C10ORFDP (100% identity) | M.HpyH1ORFDP | |
| 7 | 86 aa hypothetical protein HPCPY1662_0015 | |||
| ??? | hypothetical protein | |||
| 136 | R | Hpy8C10ORFKP (100% identity) | HpyH1ORFYP | |
| ??? | M | M.Hpy8C10ORFKP (100% identity) | M.HpyH1ORFYP | |
| 141 | ATP-dependent DNA helicase | |||
| 329 | rod shape-determining MreC family protein | |||
| 330 | R | Hpy8C10ORFIP (100% identity) | GGCAA | HpyH1XIP |
| 332 | M | M.Hpy8C10ORFIP (100% identity) | GGCAA | M.HpyH1XI |
| 334 | DUF1887 family protein | |||