Escherichia coli D72 |
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Putative Escherichia coli D72 RM systems
Ref: He,D. et al. unpublished
REBASE ref # 28375
| Sequence length: | GenBank #: | |
| Chromosome: | 4,593,539 bp | CP035312 |
| plasmid pD72-F33: | 89,963 bp | CP035314 |
| plasmid pD72-mcr1: | 96,320 bp | CP035313 |
REBASE acronym: EcoD72
Org_num: 33826
All begin ERL60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17215 | DNA helicase UvrD | |||
| 17220 | R | KpnEGKP3ORF20260P (100% identity) | EcoD72ORF17235P | |
| 17225 | DUF4268 domain-containing protein | |||
| 17230 | S | S.EcoE24377ORF286P (99% identity) | S.EcoD72ORF17235P | |
| 17235 | M | M.EcoE24377ORF286P (100% identity) | M.EcoD72ORF17235P | |
| 17240 | 729 aa hypothetical protein | |||
| 19220 | IS1 family transposase | |||
| 19225 | R | SspS13ORF3745P (57% identity) | EcoD72ORF19225P | |
| 19235 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid pD72-mcr1 | ||||
| 22665 | 3-phosphatase | |||
| 22670 | R | SspS13ORF175P (99% identity) | EcoD72ORF22680P | |
| 22675 | S | S.SspS13ORF175P (100% identity) | S.EcoD72ORF22680P | |
| 22680 | M | M.SspS13ORF175P (100% identity) | M.EcoD72ORF22680P | |
| 22685 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1695 | cell division protein DamX | |||
| 1700 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoD72DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2325 | DUF2556 domain-containing protein | |||
| 2330 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoD72ORF2330P |
| 2335 | DNA-binding transcriptional regulator Fis | |||
| 5585 | Com family DNA-binding transcriptional | |||
| 5590 | M | M.SenYU39ORF1896P (100% identity) | M.EcoD72ORF5590P | |
| 5595 | ribosome-associated translation inhibitor RaiA | |||
| 8920 | phosphohydrolase | |||
| 8925 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoD72DcmP |
| 8930 | V | V.SspS13DcmP (100% identity) | V.EcoD72DcmP | |
| 8935 | drug/metabolite exporter YedA | |||
| 14560 | replication endonuclease | |||
| 14565 | M | M.EcoMB19ORF22805P (100% identity) | GATC | M.EcoD72ORF14565P |
| 14570 | TraR/DksA family transcriptional regulator | |||
| plasmid pD72-F33 | ||||
| 22935 | 59 aa hypothetical protein | |||
| 22940 | M | M.Xca80ORFEP (100% identity) | M.EcoD72ORF22940P | |
| 22945 | 73 aa hypothetical protein | |||
| plasmid pD72-mcr1 | ||||
| 22530 | recombination-associated protein RdgC | |||
| 22535 | M | M.SspS13ORF50P (100% identity) | M.EcoD72ORF22535P | |
| 22550 | 61 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pD72-F33 | ||||
| 22830 | mobilization protein MobX | |||
| 22835 | R | SspS13ORF650P (100% identity) | EcoD72ORF22840P | |
| 22840 | M | M.SspS13ORF650P (100% identity) | M.EcoD72ORF22840P | |
| 22845 | 67 aa hypothetical protein | |||