Neisseria lactamica ST-640 020-06 |
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Putative Neisseria lactamica ST-640 020-06 RM systems
Ref: Bennett,J.S. et al. BMC Genomics 11 (1), 652 (2010)
REBASE ref # 7400
Complete sequence: 2,220,606 bp
GenBank #: FN995097 (NC_014752)
REBASE acronym: Nla640
Org_num: 6483
All begin NLA_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10630 | bifunctional 3,4-dihydroxy-2-butanone | |||
| 10640 | M | M.NlaCORFNP (100% identity) | M.Nla640ORF10640P | |
| 10650 | S | S.NlaCORFNP (100% identity) | S.Nla640ORF10640P | |
| 10660 | DNA-binding protein | |||
| 10670 | R | NlaCORFNP (100% identity) | Nla640ORF10640P | |
| 10680 | AAA ATPase | |||
| 13980 | ATP-dependent protease ATP-binding | |||
| 14000 | R | NlaCORFJP (100% identity) | Nla640ORF14070P | |
| ??? | S | S.NlaCORFJP (99% identity) | S.Nla640ORF14070P | |
| 14060 | DNA damage inducible protein | |||
| 14070 | M | M.NlaCORFJP (100% identity) | M.Nla640ORF14070P | |
| 14080 | ADP-L-glycero-D-mannoheptose epimerase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1680 | 135 aa hypothetical protein | |||
| 1690 | R | NlaCORFQP (100% identity) | CATG | Nla640ORF1700P |
| 1700 | M | M.NlaY92ORF28600P (100% identity) | CATG | M.Nla640ORF1700P |
| 1710 | restriction endonuclease | |||
| 1700 | modification methylase | |||
| 1710 | R | NlaY92ORF28560P (100% identity) | CCNGG | Nla640ORF1720P |
| 1720 | M | M.NlaY92ORF28560P (100% identity) | CCNGG | M.Nla640ORF1720P |
| 1730 | L-serine dehydratase | |||
| 3390 | 38 aa hypothetical protein | |||
| 3400 | M | M.NlaCORFAP (99% identity) | M.Nla640ORF3400P | |
| 3410 | ABC-transport system ATP-binding protein | |||
| 6860 | possible transposase | |||
| 6870 | M | C-5 cytosine-specific DNA methylase | GCGCGC | M.Nla640ORF6870P |
| 6890 | 0 aa hypothetical protein (pseudogene) | |||
| 10830 | 3-isopropylmalate dehydratase small | |||
| 10840 | M | M.NlaIV (100% identity) | GGNNCC | M.Nla640ORF10840P |
| 10850 | R | NlaIV (100% identity) | GGNNCC | Nla640ORF10840P |
| 10860 | 3-isopropylmalate dehydrogenase | |||
| 12970 | excinuclease ABC subunit A | |||
| 12980 | R | NlaCORFRP (100% identity) | CCGCGG | Nla640ORF12990P |
| 12990 | M | M.NlaCORFRP (100% identity) | CCGCGG | M.Nla640ORF12990P |
| 13000 | 177 aa hypothetical protein | |||
| 14080 | ADP-L-glycero-D-mannoheptose epimerase | |||
| 14090 | R | NlaCORFHP (100% identity) | Nla640ORF14100P | |
| 14100 | M | M.NlaCORFHP (90% identity) | CCAGA | M.Nla640ORF14100P |
| 14110 | DP-heptose synthetase | |||
| 15060 | phenylalanyl-tRNA synthetase beta | |||
| 15070 | M | M.NlaCORFGP (94% identity) | CCGG | M.Nla640ORF15070P |
| 15080 | V | V.NlaCORFGP (100% identity) | V.Nla640ORF15070P | |
| 15100 | phenylalanyl-tRNA synthetase alpha | |||
| 18300 | leucyl-trna synthetase, truncation | |||
| 18310 | R | NlaCORFFP (100% identity) | GATC | Nla640ORF18310P |
| 18320 | integrase | |||
| 18400 | 528 aa hypothetical protein | |||
| 18410 | M | M.Nla10617DndDP (99% identity) | M.Nla640DndDP | |
| 18420 | 72 aa hypothetical protein | |||
| 18420 | 72 aa hypothetical protein | |||
| 18430 | M | M.Nla10617DndCP (100% identity) | M.Nla640DndCP | |
| 18440 | dna-binding protein | |||
| 18880 | outer membrane lipoprotein GNA1946 | |||
| 18890 | RM | 954 aa hypothetical protein | CATCAC | Nla640ORF18890P |
| 18900 | inner membrane transport protein | |||
| 19480 | ATP-dependent DNA helicase | |||
| ??? | R | NlaCORFDP (100% identity) | Nla640ORF19510P | |
| 19510 | M | M.NlaCORFDP (100% identity) | GRCGYC | M.Nla640ORF19510P |
| 19520 | DNA helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10940 | 319 aa hypothetical protein | |||
| 10950 | R | NlaCORFLP (100% identity) | Nla640ORF10960P | |
| 10960 | M | M.NlaCORFLP (86% identity) | M.Nla640ORF10960P | |
| 10980 | peptidyl-prolyl cis-trans isomerase A | |||
| 12190 | tRNA pseudouridine synthase B | |||
| ??? | M | M.NlaCORFBP (99% identity) | M.Nla640ORF12210P | |
| 12220 | R | NlaCORFBP (100% identity) | Nla640ORF12210P | |
| 12230 | L-lactate dehydrogenase | |||
| 13610 | D-alanyl-D-alanine carboxypeptidase | |||
| 13620 | R | NlaCORFKP (100% identity) | Nla640ORF13630P | |
| 13630 | M | M.NlaCORFKP (99% identity) | M.Nla640ORF13630P | |
| 13640 | 66 aa hypothetical protein | |||