Haemophilus parahaemolyticus C2006000788 |
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Putative Haemophilus parahaemolyticus C2006000788 RM systems
Ref: Nichols,M. et al. unpublished
REBASE ref # 28250
Contig set: 2,117,430 bp
GenBank #: QEPS00000000 (NZ_QEPS00000000)
REBASE acronym: Hpa788
Org_num: 33547
All begin DPV86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10230 | DNA polymerase III subunit delta | |||
| 10235 | R | Hpa8479ORF1592P (97% identity) | Hpa788ORF10255P | |
| 10240 | S | S.Hin381ORF6615P (61% identity) | S.Hpa788ORF10255P | |
| 10245 | RlfB protein | |||
| 10250 | DUF3800 domain-containing protein | |||
| 10255 | M | M.Aur10221ORF467P (98% identity) | M.Hpa788ORF10255P | |
| 10260 | transcriptional regulator AsnC | |||
| 9370 | 50S ribosomal protein L1 | |||
| 9375 | R | Fca21ORF2020P (65% identity) | Hpa788ORF9385P | |
| 9380 | S | S.PluLN2ORF17500P (50% identity) | S.Hpa788ORF9385P | |
| 9385 | M | M.PbaOrORF1555P (83% identity) | M.Hpa788ORF9385P | |
| 9390 | anaerobic C4-dicarboxylate transporter | |||
| 8280 | 60 aa hypothetical protein | |||
| 8285 | M | M1.Ami305ORF4453P (52% identity) | M1.Hpa788ORF8285P | |
| 8290 | M | M2.Ami305ORF4453P (85% identity) | M2.Hpa788ORF8285P | |
| 8295 | S | S.Gme92ORFP5P (53% identity) | S.Hpa788ORF8285P | |
| 8300 | R | Ami305ORF4453P (80% identity) | Hpa788ORF8285P | |
| 8305 | methionine/alanine import family NSS transporter | |||
| 3520 | acetyl-CoA carboxylase, carboxyltransferase | |||
| 3525 | M | M.Hpa8479ORF958P (98% identity) | M.Hpa788ORF3525P | |
| 3530 | S | S1.Aro10801I (54% identity) | S1.Hpa788ORF3525P | |
| 3535 | S | S1.Ase15768ORF6740P (40% identity) | S2.Hpa788ORF3525P | |
| 3540 | R | Hpa9593ORF5585P (95% identity) | Hpa788ORF3525P | |
| 3545 | site-specific integrase | |||
| 4335 | CDP-diacylglycerol--glycerol-3-phosphate | |||
| 4340 | R | Hpa8479ORF419P (96% identity) | Hpa788ORF4355P | |
| 4345 | 345 aa hypothetical protein | |||
| 4350 | S | S.Hin8468I (64% identity) | S.Hpa788ORF4355P | |
| 4355 | M | M.Hpa9593ORF4050P (95% identity) | M.Hpa788ORF4355P | |
| 4360 | 3-phosphoserine/phosphohydroxythreonine | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7030 | 139 aa hypothetical protein | |||
| 7035 | M | M1.Hpa9593ORF4875P (98% identity) | M1.Hpa788ORF7035P | |
| 7040 | M | M2.Hpa9593ORF4875P (95% identity) | M2.Hpa788ORF7035P | |
| 7045 | RM | Hin1408ORF4590P (97% identity) | Hpa788ORF7035P | |
| 7050 | transposase | |||
| 9015 | amino acid ABC transporter substrate-binding | |||
| 9020 | RM | Ase2503ORF85P (82% identity) | Hpa788ORF9020P | |
| 9025 | amino acid ABC transporter permease | |||
| 7340 | arginine ABC transporter ATP-binding protein | |||
| 7345 | R | Hpa8479ORF1427P (94% identity) | GCGC | Hpa788ORF7350P |
| 7350 | M | M.Hpa8479ORF1427P (99% identity) | GCGC | M.Hpa788ORF7350P |
| 7355 | XRE family transcriptional regulator | |||
| 1685 | tryptophan synthase subunit alpha | |||
| 1690 | RM | Hpa8479ORF486P (98% identity) | Hpa788ORF1690P | |
| 1695 | S | S.HinII8ORF13420P (59% identity) | S.Hpa788ORF1690P | |
| 1700 | DNA polymerase I | |||
| 2425 | 383 aa hypothetical protein | |||
| 2430 | M | M.Hpa8479ORF663P (99% identity) | M.Hpa788ORF2430P | |
| 2435 | 73 aa hypothetical protein | |||
| 3785 | XRE family transcriptional regulator | |||
| 3790 | R | M.Pmu385ORF3440P (29% identity) | Hpa788ORF3795P | |
| 3795 | M | M.Aeq3579ORF2750P (89% identity) | M.Hpa788ORF3795P | |
| 3800 | 38 aa hypothetical protein | |||
| 3995 | 102 aa hypothetical protein | |||
| 4000 | M | M.Hpa9593ORF10025P (99% identity) | M.Hpa788ORF4000P | |
| 4005 | replication protein | |||
| 4010 | 155 aa hypothetical protein | |||
| 4015 | M | M.Hpa9593ORF10040P (100% identity) | M.Hpa788ORF4015P | |
| 4020 | integrase | |||
| 4075 | DUF1367 family protein | |||
| 4080 | M | M.Hpa9593ORF10105P (99% identity) | M.Hpa788ORF4080P | |
| 4085 | ATP-binding protein | |||
| 5115 | electron transport complex subunit RsxG | |||
| 5120 | M | M.Hsp5679ORF7705P (79% identity) | M.Hpa788ORF5120P | |
| 5125 | electron transport complex subunit RsxD | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2715 | translation initiation factor IF-2 | |||
| 2720 | M | M.Hpa9593ORF6525P (71% identity) | M.Hpa788ORF2720P | |
| 2725 | R | Hpa9593ORF6525P (97% identity) | Hpa788ORF2720P | |
| 2730 | ATP-dependent helicase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 405 | AI-2E family transporter | |||
| 410 | M | M.Hpa9593ORF9205P (97% identity) | M.Hpa788ORF410P | |
| 415 | 3-dehydroquinate synthase | |||