Escherichia coli BR43-DEC |
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Putative Escherichia coli BR43-DEC RM systems
Ref: da Silva,P. et al. unpublished
REBASE ref # 28181
Complete sequence: 5,122,458 bp
GenBank #: CP035377
REBASE acronym: EcoBR43
Org_num: 33452
All begin ETE54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 140 | type II toxin-antitoxin system Phd/YefM family | |||
| 145 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoBR43ORF145P |
| 150 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoBR43ORF145P |
| 155 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoBR43ORF145P |
| 160 | IS1 family transposase | |||
| 22995 | 267 aa hypothetical protein | |||
| 23000 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoBR43ORF23005P |
| 23005 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoBR43ORF23005P |
| 23010 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoBR43ORF23005P |
| 23015 | 61 aa hypothetical protein | |||
| 24860 | restriction endonuclease | |||
| 24865 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoBR43ORF24865P |
| 24870 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoBR43ORF24865P |
| 24875 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoBR43ORF24865P |
| 24880 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | 708 aa hypothetical protein CR517_25310 | |||
| 50 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoBR43ORF55P |
| 55 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoBR43ORF55P |
| 60 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoBR43ORF55P |
| 65 | IS3 family transposase | |||
| 3455 | cell division protein DamX | |||
| 3460 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoBR43DamP |
| 3465 | ribulose-phosphate 3-epimerase | |||
| 3880 | DUF2556 domain-containing protein | |||
| 3885 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoBR43ORF3885P |
| 3890 | DNA-binding transcriptional regulator Fis | |||
| 7635 | 68 aa hypothetical protein | |||
| 7640 | M | M.EcoRL21ORF6860P (100% identity) | M.EcoBR43ORF7640P | |
| 7645 | AAA family ATPase | |||
| 7735 | PerC family transcriptional regulator | |||
| 7740 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoBR43ORF7740P |
| 7745 | LexA family transcriptional regulator | |||
| 7775 | 67 aa hypothetical protein | |||
| 7780 | M | M.Ecos142ORF20090P (100% identity) | M.EcoBR43ORF7780P | |
| 7785 | phage lysis protein EssD | |||
| 7915 | 257 aa hypothetical protein | |||
| 7920 | M | M.Sso8033ORF3755P (100% identity) | M.EcoBR43ORF7920P | |
| 7925 | R | Sso8033ORF3755P (99% identity) | EcoBR43ORF7920P | |
| 7930 | pseudogene | |||
| 11060 | phosphohydrolase | |||
| 11065 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoBR43DcmP |
| 11070 | V | V.SflC32DcmP (74% identity) | V.EcoBR43DcmP | |
| 11075 | drug/metabolite exporter YedA | |||
| 15195 | 108 aa hypothetical protein | |||
| 15210 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoBR43ORF15210P |
| 15215 | TrmB family transcriptional regulator | |||
| 19440 | XRE family transcriptional regulator | |||
| 19445 | M | M.KpnYN1ORFGP (89% identity) | M.EcoBR43ORF19445P | |
| 19450 | 71 aa hypothetical protein | |||
| 25165 | 0 aa hypothetical protein | |||
| 25170 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoBR43ORF25170P |
| 25175 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12225 | shufflon system plasmid conjugative transfer | |||
| 12230 | R | Ecost88ORF24685P (100% identity) | EcoBR43ORF12235P | |
| 12235 | M | M.EcosS2ORF3675P (100% identity) | M.EcoBR43ORF12235P | |
| 12240 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | 60 aa hypothetical protein | |||
| 40 | R | EcosS3McrBP (100% identity) | EcoBR43McrBP | |
| ??? | R | EcoU15AMcrCP (100% identity) | EcoBR43McrCP | |
| 50 | Alw26I/Eco31I/Esp3I family type II restriction | |||